v5.2.0
- The default
--align
method forphab
andbench
switched to POA. See discussion for details. - Fix bug in
--pick ac
where FN/FP variants were not being counted/output. - Fix
--dup-to-ins
Ticket #258 ga4gh
now also writes a variant count summary json
Full Changelog: v5.1.1...v5.2.0