Simplifying notebook installs by removing dependencies

AFM-SPM · Oct 11, 2023 · 4eb4c8f · 4eb4c8f
1 parent a3f8a8d
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Showing 3 changed files with 16 additions and 14 deletions.
diff --git a/content/00-Walkthrough-minicircle.ipynb b/content/00-Walkthrough-minicircle.ipynb
@@ -33,7 +33,7 @@
    "id": "c67d027d-4fee-4dba-85e0-624d99850ed6",
    "metadata": {},
    "source": [
-    "## Getting Started\n"
+    "# Setup\n"
    ]
   },
   {
@@ -43,7 +43,7 @@
    "source": [
     "## Install requirements\n",
     "\n",
-    "A few libraries need manually loading  before you can run this Notebook"
+    "A few libraries need isntalling before you can run this Notebook. This will take a short while as the packages are downloaded and installed."
    ]
   },
   {
@@ -53,8 +53,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "%pip install pgfinder==0.0.3\n",
-    "%pip install ipywidgets matplotlib nupy"
+    "%pip install ipywidgets\n",
+    "%pip install topostats"
    ]
   },
   {
@@ -64,8 +64,7 @@
    "source": [
     "### Loading Libraries and Modules\n",
     "\n",
-    "TopoStats is written as a series of modules with various classes and functions. In order to use these interactively we\n",
-    "need to `import` them."
+    "The required libraries and modules are now `import`ed."
    ]
   },
   {

diff --git a/content/02-Summary-statistics-and-plots.ipynb b/content/02-Summary-statistics-and-plots.ipynb
@@ -61,9 +61,6 @@
    "outputs": [],
    "source": [
     "%pip install ipywidgets\n",
-    "%pip install matplotlib\n",
-    "%pip install pandas\n",
-    "%pip install seaborn\n",
     "%pip install topostats"
    ]
   },

diff --git a/content/03-Plotting-scans.ipynb b/content/03-Plotting-scans.ipynb
@@ -28,9 +28,7 @@
    "id": "5f4a00d6-93ed-469d-8323-cf49f68ef266",
    "metadata": {},
    "source": [
-    "# Setup\n",
-    "\n",
-    "The first step required is to install some Python libraries required to load and plot the data."
+    "# Setup"
    ]
   },
   {
@@ -51,11 +49,19 @@
    "outputs": [],
    "source": [
     "%pip install ipywidgets\n",
-    "%pip install matplotlib\n",
-    "%pip install numpy\n",
     "%pip install topostats"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "id": "a108706d-8a3c-4161-8704-ec14cb7dbdcf",
+   "metadata": {},
+   "source": [
+    "## Loading Libraries and Modules\n",
+    "\n",
+    "The required libraries and modules are now `import`ed."
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,