EMR-AGENT Repository

A comprehensive repository containing AI-powered tools for Electronic Medical Record (EMR) analysis, including automated cohort generation and clinical feature extraction.

🏗️ Repository Structure

This repository contains two main projects:

EMR-AGENT/
├── EMR-Agent/          # Main EMR Agent system
└── PreCISE-EMR/        # PreCISE-EMR preprocessing toolkit  

📁 Projects Overview

🤖 EMR-Agent

An advanced AI agent system for automated patient cohort generation and clinical feature mapping from EMR databases.

Key Features:

• CFSA (Cohort and Feature Selection Agent): Automated patient cohort and feature extraction
• CMA (Code Mapping Agent): Clinical feature mapping and selection
• Support for multiple EMR databases (eICU, MIMIC-III, SICdb)
• Ablation study modules for comprehensive evaluation

📖 For detailed information, please refer to: EMR-Agent/README.md

🔧 PreCISE-EMR

A preprocessing and dataset construction toolkit for EMR data analysis.

Key Features:

• EMR data preprocessing pipelines
• Dataset construction utilities
• Data quality assessment tools
• Feature engineering capabilities

📖 For detailed information, please refer to: PreCISE-EMR/README.md

🚀 Quick Start

Prerequisites

# Clone the repository
git clone <repository-url>
cd EMR-AGENT

# Install common dependencies
pip install -r requirements.txt

Getting Started

1. For EMR-Agent: Navigate to the EMR-Agent/ directory and follow the instructions in EMR-Agent/README.md

2. For PreCISE-EMR: Navigate to the PreCISE-EMR/ directory and follow the instructions in PreCISE-EMR/README.md

📄 Citation

If you use this repository in your research, please cite our work:

@article{emr-agent,
  title={EMR-AGENT: Automating Cohort and Feature Extraction from EMR Databases},
  author={[Authors]},
  journal={[Journal]},
  year={[Year]}
}