There is a recent pull request that using the new --shuffle option fo… #153
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| name: build-tests | |
| on: | |
| push: | |
| branches: [ master, develop ] | |
| pull_request: | |
| branches: [ master ] | |
| workflow_dispatch: | |
| inputs: | |
| git-ref: | |
| description: Git SHA-1 commit hash (optional) | |
| required: false | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-20.04, ubuntu-latest ] | |
| compiler: [ clang, gcc ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update;sudo apt-get install -y libbz2-dev liblzma-dev libcurl4-openssl-dev | |
| git clone --depth=1 https://github.com/ANGSD/smallBam.git | |
| git clone --depth=1 --recursive https://github.com/samtools/htslib | |
| - name: Compile dependencies (htslib) | |
| run: | | |
| cd htslib;make | |
| - name: Compile main program (angsd and misc/*) | |
| run: | | |
| make HTSSRC=htslib/ | |
| - name: Run Unit tests | |
| run: | | |
| make test BAMDIR=./smallBam/ |