the old dict learning code was incompatible with multislice and OPRs, this should fix it (for Nopr = 1), for Nopr>1, not sure #435
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Python application | |
| on: | |
| push: | |
| branches: [ "main", "ci" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| workflow_dispatch: | |
| env: | |
| PTYCHO_CI_DATA_DIR: /local/ptycho_aux_data/ci_data | |
| CONDA_EXE: /local/actions-env/miniconda3/condabin/conda | |
| CONDA_ROOT: /local/actions-env/miniconda3/ | |
| permissions: | |
| contents: read | |
| jobs: | |
| lint: | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| runs-on: self-hosted | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Activate environment | |
| id: activate_env | |
| run: | | |
| source $CONDA_ROOT/bin/activate ci_py311_base | |
| - name: Install Ruff | |
| run: $CONDA_ROOT/envs/ci_py311_base/bin/pip install ruff | |
| - name: Run Ruff | |
| run: $CONDA_ROOT/envs/ci_py311_base/bin/ruff check src/ --output-format=github | |
| linux-x86-gpu: | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| runs-on: self-hosted | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Update test data | |
| id: update_test_data | |
| run: | | |
| PACKAGE_DIR=$(pwd) | |
| cd $PTYCHO_CI_DATA_DIR | |
| git pull origin main | |
| cd $PACKAGE_DIR | |
| - name: Create environment | |
| id: create_env | |
| run: | | |
| export ENVNAME=ci_py311_$(date +%s) | |
| $CONDA_EXE create --quiet --yes --force -n $ENVNAME --clone ci_py311_base | |
| echo "ENVNAME=$ENVNAME" >> $GITHUB_ENV | |
| - name: Install dependencies | |
| run: | | |
| $CONDA_EXE env list | |
| source $CONDA_ROOT/bin/activate $ENVNAME | |
| $CONDA_ROOT/envs/$ENVNAME/bin/pip install --upgrade pip | |
| $CONDA_ROOT/envs/$ENVNAME/bin/pip install pytest | |
| if [ -f requirements.txt ]; then $CONDA_ROOT/envs/$ENVNAME/bin/pip install -r requirements.txt; fi | |
| $CONDA_ROOT/envs/$ENVNAME/bin/pip install -e . | |
| $CONDA_ROOT/envs/$ENVNAME/bin/pip install torch==2.4.1 torchvision==0.19.1 numpy==2.1.2 | |
| - name: List build environment | |
| run: $CONDA_EXE list -n $ENVNAME | |
| - name: Test with pytest | |
| run: | | |
| source $CONDA_ROOT/bin/activate $ENVNAME | |
| echo $(which python) | |
| cd tests | |
| pytest -s --high-tol --save-timing | |
| - name: Remove environment | |
| if: always() | |
| run: | | |
| $CONDA_EXE remove -n $ENVNAME --all --yes --force | |