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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 364 156

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 24 15

Repositories

Showing 10 of 436 repositories
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 28 9 262 10 Updated Aug 10, 2025
  • jem Public

    Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.

    AllenInstitute/jem’s past year of commit activity
    HTML 4 3 0 0 Updated Aug 9, 2025
  • ephys-analysis-tools Public

    Code base generating formatted data tables that streamlines data analysis process for ephys production metadata.

    AllenInstitute/ephys-analysis-tools’s past year of commit activity
    Python 0 0 0 0 Updated Aug 8, 2025
  • mtrain_regimens Public

    Repository to track training stages and regimens for visual behavior

    AllenInstitute/mtrain_regimens’s past year of commit activity
    Python 3 4 14 0 Updated Aug 8, 2025
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 79 28 18 7 Updated Aug 8, 2025
  • ipfx Public

    computes intrinsic cell features from intracellular electrophysiology data

    AllenInstitute/ipfx’s past year of commit activity
    Python 27 38 59 7 Updated Aug 8, 2025
  • patchseq_autotrace Public

    Execution of patchseq slice autotrace pipeline

    AllenInstitute/patchseq_autotrace’s past year of commit activity
    Python 0 0 0 0 Updated Aug 8, 2025
  • mmc_gene_mapper Public

    Gene ID mapper/ortholog finder for MapMyCells

    AllenInstitute/mmc_gene_mapper’s past year of commit activity
    Python 0 0 0 0 Updated Aug 8, 2025
  • acq4 Public Forked from acq4/acq4

    Data acquisition for patch clamp ephys / optogenetics / imaging experiments

    AllenInstitute/acq4’s past year of commit activity
    Python 1 MIT 52 2 0 Updated Aug 8, 2025
  • CDS-metadata-schemas Public template

    Repository for metadata schemas as used by the Community Data Standards Team

    AllenInstitute/CDS-metadata-schemas’s past year of commit activity
    HTML 0 MIT 0 0 1 Updated Aug 7, 2025
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