Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating a predicted segmentation of neural arbors by computing skeleton-based metrics.
Python 6
Repositories
- neuron-fragment-extractor Public
Python-based tool designed to generate training data for machine learning models used in automated correction of split mistakes in neuron segmentations.
AllenNeuralDynamics/neuron-fragment-extractor’s past year of commit activity - dynamic-foraging-task Public
Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control
AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity - aind-beh-ephys-analysis Public
AllenNeuralDynamics/aind-beh-ephys-analysis’s past year of commit activity