Skip to content
@AllenNeuralDynamics

Allen Institute for Neural Dynamics

we're hiring: https://alleninstitute.org/careers/

Popular repositories Loading

  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 26 17

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 14 7

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 13 12

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 12 3

  5. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 8

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 8 3

Repositories

Showing 10 of 489 repositories
  • nmcp-deploy Public
    AllenNeuralDynamics/nmcp-deploy’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 15, 2025
  • aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    AllenNeuralDynamics/aind-ephys-pipeline’s past year of commit activity
    Nextflow 14 MIT 7 7 0 Updated Oct 15, 2025
  • aind-qc-portal Public

    Quality control portal

    AllenNeuralDynamics/aind-qc-portal’s past year of commit activity
    Python 2 MIT 0 20 0 Updated Oct 15, 2025
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging’s past year of commit activity
    C# 3 MIT 0 16 2 Updated Oct 15, 2025
  • aind-vr-foraging-primary-data-nwb-packaging Public

    Capsule that packages primary data for VR Foraging task using data contract

    AllenNeuralDynamics/aind-vr-foraging-primary-data-nwb-packaging’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 15, 2025
  • contraqctor Public

    A library for managing data contracts and quality control in behavioral datasets.

    AllenNeuralDynamics/contraqctor’s past year of commit activity
    Python 0 MIT 1 9 0 Updated Oct 14, 2025
  • aind-vr-foraging-primary-qc Public

    Capsule that performs qc on primary data of VR Foraging task

    AllenNeuralDynamics/aind-vr-foraging-primary-qc’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Oct 14, 2025
  • aind-z1-camera-alignment Public

    Code to align spectrally adjacent channels in Zeiss Lightsheet 7 (Z1) datasets

    AllenNeuralDynamics/aind-z1-camera-alignment’s past year of commit activity
    Python 0 MIT 0 10 1 Updated Oct 15, 2025
  • abc-merfish-analysis Public

    Shared tools for accessing and processing ABC Atlas MERSCOPE data.

    AllenNeuralDynamics/abc-merfish-analysis’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 14, 2025
  • thalmanac Public
    AllenNeuralDynamics/thalmanac’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 14, 2025
View all repositories

Top languages

Loading…