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Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 25 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 7 4

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating a predicted segmentation of neural arbors by computing skeleton-based metrics.

    Python 6

  5. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  6. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

Repositories

Showing 10 of 344 repositories
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging’s past year of commit activity
    C# 2 MIT 0 15 1 Updated Feb 21, 2025
  • aind-scicomp-nautilex Public

    Repository for testing nautilex hackathon project.

    AllenNeuralDynamics/aind-scicomp-nautilex’s past year of commit activity
    Python 0 MIT 0 1 2 Updated Feb 21, 2025
  • neuron-fragment-extractor Public

    Python-based tool designed to generate training data for machine learning models used in automated correction of split mistakes in neuron segmentations.

    AllenNeuralDynamics/neuron-fragment-extractor’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 21, 2025
  • pyharp Public Forked from harp-tech/pyharp

    Python implementation of the Harp protocol.

    AllenNeuralDynamics/pyharp’s past year of commit activity
    Python 0 MIT 2 1 2 Updated Feb 21, 2025
  • Aind.Behavior.ForceForaging Public

    A repository for the aind-force-foraging experiment

    AllenNeuralDynamics/Aind.Behavior.ForceForaging’s past year of commit activity
    C# 1 MIT 0 6 1 Updated Feb 21, 2025
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity
    Python 5 MIT 4 102 (1 issue needs help) 10 Updated Feb 20, 2025
  • AllenNeuralDynamics/dynamic-routing-unit-drift-qc-dashboard’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 20, 2025
  • aind-metadata-service Public

    Service to retrieve Labtracks/Sharepoint info using a REST API

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 15 0 Updated Feb 20, 2025
  • AllenNeuralDynamics/aind-beh-ephys-analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 20, 2025
  • harp.device.valve-controller Public

    0368: a 16-channel valve controller

    AllenNeuralDynamics/harp.device.valve-controller’s past year of commit activity
    C++ 0 0 3 0 Updated Feb 20, 2025

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