AlphaAssign is a parentage assignment algorithm that works with SNP array and GBS data. For more information, see Parentage assignment with genotyping-by-sequencing data, Journal of Animal Breeding and Genetics.
The AlphaAssign.zip file contains a python3 wheel file, a manual, and an example dataset.
AlphaAssign is part of a suite of software that our group has developed. It is fully and freely available for all use under the MIT License.
Whalen, A, Gorjanc, G, Hickey, JM. (2018). Parentage assignment with genotyping-by-sequencing data. Journal of Animal Breeding and Genetics; doi: https://doi.org/10.1111/jbg.12370