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79 Open 58 Closed
79 Open 58 Closed
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Issues list

Small bug in simulation code for accuracy test
#181 opened Nov 11, 2024 by XingerTang
Update User Warnings
#180 opened Oct 24, 2024 by RosCraddock
call_phase argument not documented
#179 opened Oct 22, 2024 by janaobsteter
2
Review functional tests for specific errors
#178 opened Oct 14, 2024 by RosCraddock
No improvement with true recombination rate
#174 opened Sep 3, 2024 by XingerTang
1
Recombination event interval prediction
#173 opened Aug 28, 2024 by XingerTang
Review Accuracy Test Outputs
#172 opened Aug 22, 2024 by RosCraddock
3 tasks
Add seed value input to the tests
#170 opened Aug 19, 2024 by XingerTang
Improve the algorithm of the main peeling function
#169 opened Jun 28, 2024 by XingerTang
3 of 10 tasks
9
Recombination map initialization with partial chromosome
#168 opened Jun 21, 2024 by XingerTang
Build functionality to input phased data
#167 opened Jun 6, 2024 by AprilYUZhang
3
Documentation update for Alternative Allele Frequencies Output
#166 opened Jun 5, 2024 by RosCraddock
implement Viterbi on segregation prob
#165 opened May 29, 2024 by AprilYUZhang
23
Mutation rate in AlphaPeel enhancement New feature or request
#164 opened May 22, 2024 by XingerTang
3
Formula modificaiton for the estimation of recombinaiton rate
#162 opened Apr 5, 2024 by AprilYUZhang
21
Do we need to add base population inbreeding coefficient?
#161 opened Mar 28, 2024 by gregorgorjanc
Can we estimate effect of some other factors on genotype and allele probabilities?
#160 opened Mar 26, 2024 by gregorgorjanc
Update Change Log for new metafounders and alternative allele frequencies functionality.
#159 opened Jan 14, 2024 by RosCraddock
1
Ensure map file input is handled properly when not sorted in ascending order
#155 opened Jan 10, 2024 by XingerTang
1
Develop tests for alt_allele_prob_file and est_alt_allele_prob with multiple metafounders
#150 opened Jan 4, 2024 by XingerTang
1 of 5 tasks
3
Estimation of allele freq with metafounders
#148 opened Jan 4, 2024 by XingerTang
23
Consolidate storing maf between PeelingInfo and Pedigree
#147 opened Jan 4, 2024 by XingerTang
1
Estimate rec_prob
#145 opened Dec 22, 2023 by XingerTang
3 tasks
1
Add rec_prob input and output
#144 opened Dec 22, 2023 by XingerTang
3 of 5 tasks
@XingerTang
10
Check all the arguements and design logic tests
#143 opened Dec 11, 2023 by AprilYUZhang
6 tasks
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