This project implements Gibbs Sampling with background models and applies to find motifs for transcription factors in Tuberculosis.
This work was done solely by me (Anirudh Narsipur) as my final project for CSCI 1810 Computational Molecular Biology in Fall 2021 at Brown University.
The main components are:
Application.ipynb : Jupyter notebook that loads the data and runs the code
background.py : Calculates background models
project.py : The implementation of Gibbs Sampling
FinalProjectPpt.pdf : A pdf version of the presentation I made in class
Paper.pdf : A detailed paper explaining the project