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Working from home
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Working from home
7 followers · 47 following

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Achievement: Pull Sharkx3Achievement: YOLOAchievement: Pair Extraordinairex2Achievement: Quickdraw

Achievements

Achievement: Pull Sharkx3Achievement: YOLOAchievement: Pair Extraordinairex2Achievement: Quickdraw

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@stjude-dnb-binfcore

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AntoniaChroni/README.md

Hi, I’m Tonia 😊

I am an evolutionary computational biologist by training with extensive expertise in molecular evolution and phylogenetics, ecology and biogeography in the context of species and cancer.

👩🏻‍💻 Currently a Senior Bioinformatics Research Scientist at the St. Jude Children’s Research Hospital

📊️ Support project analysis

🚀 Build and automate computational workflows and pipelines

🧬 Extensive experience with WGS/WES, sc-RNA-Seq, sc-ATAC-Seq and sc-TCR/BCR-Seq analysis in the context of tumor evolution and microenvironment

👷 Passionate about computation, automation and reproducibility for scientists

Here’s some stats on my GitHub repos

GitHub only counts personal, non-forked/public repos—organization and forked repos are excluded by default.

🛠 Skills & Technologies I Use

These cover work across personal, forked, and org repos:

  • Programming Languages:
    • Bash/ Shell 🖥️
    • Markdown / YAML 🧾
    • Python 🐍
    • R 📊
  • Containerization & Workflow Tools:
    • Docker
    • Singularity
  • Version Control & CI/CD:
    • Git
    • GitHub (Actions, Packages, Workflows)

😃 For more details on my work and research, please visit my digital 🏠 or my LinkedIn 🏠 or Google scholar profile.

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  1. stjude-dnb-binfcore/sc-rna-seq-snap stjude-dnb-binfcore/sc-rna-seq-snap Public

    Automated and containerized workflow for 10X single cell and single nuclei RNA (sc/snRNA) data.

    HTML 2 41

  2. stjude-dnb-binfcore/sc-epigenie stjude-dnb-binfcore/sc-epigenie Public

    Automated and containerized workflow for 10X single-cell ATAC (scATAC-Seq) data.

    HTML 1 3

  3. stjude-dnb-binfcore/sc-rna-seq-snap-10x-Flex stjude-dnb-binfcore/sc-rna-seq-snap-10x-Flex Public

    Automated and containerized workflow for 10X Flex single cell and single nuclei RNA (sc/snRNA) data.

    R 2

  4. stjude-dnb-binfcore/trainings stjude-dnb-binfcore/trainings Public

    HTML 1

  5. stjude-dnb-binfcore/epigenomic-profiling-analysis stjude-dnb-binfcore/epigenomic-profiling-analysis Public

    Automated workflow for epigenomics seq data

    HTML 1

  6. pbta-tumor-evolution pbta-tumor-evolution Public

    Forked from d3b-center/pbta-tumor-evolution

    HTML