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Arc Research Institute

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  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 3.3k 388

  2. state state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    Python 522 146

  3. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 497 50

  4. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 152 31

  5. cell-eval cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    Python 122 41

  6. xsra xsra Public

    An efficient CLI to extract sequences from the SRA

    Rust 121 11

Repositories

Showing 10 of 32 repositories
  • state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    ArcInstitute/state’s past year of commit activity
    Python 522 146 31 (1 issue needs help) 22 Updated Feb 24, 2026
  • MULTI-evolve Public Forked from VincentQTran/MULTI-evolve

    MULTI-evolve: a machine learning-guided end-to-end framework for engineering hyperactive multi-mutant proteins

    ArcInstitute/MULTI-evolve’s past year of commit activity
    Python 24 Apache-2.0 9 0 0 Updated Feb 23, 2026
  • cell-load Public

    pytorch dataloaders for single-cell perturbation data

    ArcInstitute/cell-load’s past year of commit activity
    Python 43 MIT 24 12 4 Updated Feb 23, 2026
  • cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    ArcInstitute/cell-eval’s past year of commit activity
    Python 122 MIT 41 4 6 Updated Feb 19, 2026
  • bqtools Public

    A command line utilty for working with BINSEQ files

    ArcInstitute/bqtools’s past year of commit activity
    Rust 35 3 6 0 Updated Feb 15, 2026
  • arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    ArcInstitute/arc-virtual-cell-atlas’s past year of commit activity
    Jupyter Notebook 497 50 1 0 Updated Feb 12, 2026
  • cyto Public

    A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries

    ArcInstitute/cyto’s past year of commit activity
    Rust 37 BSD-3-Clause 2 21 2 Updated Feb 11, 2026
  • pycyto Public

    python utilities for cyto

    ArcInstitute/pycyto’s past year of commit activity
    Python 1 BSD-3-Clause 0 3 0 Updated Feb 12, 2026
  • scBaseCount_analysis Public

    Data analysis for the scBaseCount manuscript

    ArcInstitute/scBaseCount_analysis’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Feb 9, 2026
  • stack Public

    Stack is a single-cell foundation model that enables in-context learning at inference time.

    ArcInstitute/stack’s past year of commit activity
    Jupyter Notebook 86 10 1 0 Updated Jan 30, 2026

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