Search results

Addition of alleles to schema

Status: Open.

#222 In B-UMMI/chewBBACA;

· arshdeep1k opened on Jun 24, 2025

Why does CreateSchema not generate the necessary schema files (.json, .gbk, schema_alleles) for running AlleleCall?

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#220 In B-UMMI/chewBBACA;

· MayMoraxella opened on May 24, 2025

AlleleCall not detecting valid .fna input files (v2.8.5)

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#218 In B-UMMI/chewBBACA;

· EdDjonlagic2 opened on May 13, 2025

Error on assign_allele_ids in AlleleCall module

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#215 In B-UMMI/chewBBACA;

· artmisk13 opened on Mar 19, 2025

Mamba installation of chewBBACA v3.3.10 requires plotly v5

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Type: Bug

Status: Open.

#214 In B-UMMI/chewBBACA;

· valzip opened on Mar 8, 2025

Application of chewBBACA onto Fungal Genomes

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#213 In B-UMMI/chewBBACA;

· maurkarr opened on Feb 4, 2025

PrepExternalSchema command stuck at 98% completeness

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#212 In B-UMMI/chewBBACA;

· AnyaKovalenko opened on Jan 23, 2025

What will happen when using chewBBACA with a diploid genome?

Status: Open.

#211 In B-UMMI/chewBBACA;

· dutchscientist opened on Jan 13, 2025

Assigning cgSTs - Brucella spp. cgMLST

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#210 In B-UMMI/chewBBACA;

· wjewers opened on Dec 3, 2024

able to use on assemblies with seq len <100,000 char?

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#209 In B-UMMI/chewBBACA;

· ojessop opened on Oct 14, 2024

keep pyrodigal output in gff

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Type: Enhancement

Type: Question

Status: Open.

#207 In B-UMMI/chewBBACA;

· juanjo255 opened on Sep 4, 2024

Feature Request: Add Function to Generate MSA FASTA File Using <code>results_allele.tsv</code>

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Type: Enhancement

Status: Open.

#206 In B-UMMI/chewBBACA;

· vascokarla opened on Aug 28, 2024