Interface with webprotege #53
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Pull Request Test Coverage Report for Build 12949275347Details
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| def entities_to_rdf( | ||
| graph: "Graph", module_path: str, logger: "BoundLoggerLazyProxy" |
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How does the "Graph" class work? Does it inserts everything inside the file already nested?
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Graph is the class to describe the triples in notologies, and hence when printing to RDF/XML already has the format looked for
"triples" are normally 2 nodes connected via a relationship. Something like: (node_1, relationship, node_2), which you can see some examples when using Graph.add(). Basically it is a way of defining DAGs.
Here the complication is not printing to RDF/XML, or to create the Graph, but actually mapping the openBIS info into the triples.
Added extraction of id after instantiation as the class name Fix testing
Added _base_attrs to BaseEntity property Added entities_to_rdf cli
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Fix encoding in rdf file
Using only rdfs and dc for annotations Restricted pydantic version
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TODO:
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Deleted inheritance from ObjectType and other types
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Changed OWL.Class to OWL.Thing Added descriptions for relationships
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Closes #35
@carlosmada22 do you mind reviewing this? It is working quite well, I can also drive you through the WebProtege thingy to export from the generated
.owlfile, but it is quite easyList of main changes:
export_to_rdfCLIentities_to_rdf.pymoduleto_rdf()method for BaseEntity in entities.pyidfield of entities (instead ofcode). This is extracted without the need of populating it when defining a new entity.