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Issues list

fastqc failed with file not found
#185 by genec1 was closed Nov 22, 2020
4
toil-rnaseq failure: 'Expando' object has no attribute 'ci_test'
#184 by genec1 was closed Nov 17, 2020
2
Toil run dying on SRA fastq file
#183 by genec1 was closed Nov 17, 2020
2
Unable to install -- python incompatabilities
#181 by genec1 was closed Aug 17, 2020
@jvivian
2
Pin Toil version due to backwards compatibility Docker change
#180 by jvivian-atreca was closed Aug 17, 2020
Is there any options that could not run hera in config files?
#179 by biosyf was closed May 13, 2019
1
command not found
#178 by cynthia143234 was closed Mar 26, 2019
4
Fix gdc-client container
#175 by jvivian was closed Jan 29, 2019
@jvivian
Investigate FASTP as a replacement for FastQC and CutAdapt
#174 by jvivian was closed Mar 10, 2020
@jvivian
1
AttributeError: 'Expando' object has no attribute 'bamqc'
#173 by hmkim was closed Dec 27, 2018
2
Where is transcriptome_hg38_gencodev23.fasta from?
#170 by wangshun1121 was closed Dec 13, 2018
3
Update location of test samples to new bucket
#168 by jvivian was closed Dec 6, 2018
@jvivian
Build broken on master
#164 by jvivian was closed Oct 30, 2018
@jvivian
Create test samples that cutadapt can run
#161 by jvivian was closed Oct 26, 2018
@jvivian
1
Move test files to courtyard server
#160 by jvivian was closed Oct 22, 2018
@jvivian
1
Update cutadapt to 1.18
#159 by jvivian was closed Mar 10, 2020
@jvivian
1
Add BAM umend QC
#158 by jvivian was closed Oct 17, 2018
Add BAM Umend QC as an option
#157 by jvivian was closed Oct 30, 2018
@jvivian
1
Move workflow inputs back to S3
#155 by jvivian was closed Sep 21, 2018
@jvivian
2
Update gencode_hugo_map container to fix ZeroDivisionError when no genes map bug
#154 by jvivian was closed Sep 1, 2018
@jvivian
Change input creation to use tarball_files bug
#153 by jvivian was closed Sep 1, 2018
@jvivian
Add documentation for creating workflow inputs
#152 by jvivian was closed Aug 24, 2018
Add ability to handle mismatched fastq files Feature Request
#151 by jvivian was closed Oct 30, 2018
@jvivian
1
Exception in thread Thread-641:
#150 by hmkim was closed Jul 28, 2018
3
docker: Cannot connect to the Docker daemon. Is the docker daemon running on this host?.
#149 by hmkim was closed Jul 28, 2018
1
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