Skip to content
@BIMSBbioinfo

BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

Popular repositories Loading

  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 257 34

  2. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 105 19

  3. genomation genomation Public

    R package for genomic feature analysis and visualization

    HTML 79 24

  4. compgen2021 compgen2021 Public

    R 77 24

  5. flexynesis flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    Python 65 18

  6. PocketVina PocketVina Public

    GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementation of PocketVina

    C++ 65 8

Repositories

Showing 10 of 111 repositories
  • flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    BIMSBbioinfo/flexynesis’s past year of commit activity
    Python 65 18 12 0 Updated Sep 13, 2025
  • ImageArray Public
    BIMSBbioinfo/ImageArray’s past year of commit activity
    R 2 1 0 0 Updated Sep 13, 2025
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    BIMSBbioinfo/VoltRon’s past year of commit activity
    R 105 19 2 0 Updated Sep 9, 2025
  • flexynesis-benchmarks Public

    Comprehensive continuous benchmarking of tools for multi-omics data integration

    BIMSBbioinfo/flexynesis-benchmarks’s past year of commit activity
    Python 2 2 2 0 Updated Aug 25, 2025
  • anglemania Public

    Improved feature extraction for scRNA-seq dataset integration.

    BIMSBbioinfo/anglemania’s past year of commit activity
    R 3 GPL-3.0 0 5 0 Updated Aug 12, 2025
  • compgen_course_2025_module3 Public

    Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning

    BIMSBbioinfo/compgen_course_2025_module3’s past year of commit activity
    Jupyter Notebook 63 28 0 0 Updated Aug 1, 2025
  • deconvR Public

    The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.

    BIMSBbioinfo/deconvR’s past year of commit activity
    R 10 3 0 0 Updated Jul 28, 2025
  • flexynesis_manuscript Public

    Manuscript material for Flexynesis

    BIMSBbioinfo/flexynesis_manuscript’s past year of commit activity
    R 2 MIT 1 0 0 Updated Jul 26, 2025
  • PocketVina Public

    GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementation of PocketVina

    BIMSBbioinfo/PocketVina’s past year of commit activity
    C++ 65 MIT 8 3 1 Updated Jul 4, 2025
  • collab_barleben_kolesnichenko_colitis Public

    Collaboration project with Luisa Barleben Kolesnichenko Lab - Acute Colitis in Mice

    BIMSBbioinfo/collab_barleben_kolesnichenko_colitis’s past year of commit activity
    HTML 0 0 0 0 Updated Jun 19, 2025