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BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

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  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 255 34

  2. genomation genomation Public

    R package for genomic feature analysis and visualization

    R 74 22

  3. compgen2021 compgen2021 Public

    R 73 23

  4. maui maui Public

    Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

    Jupyter Notebook 48 20

  5. ikarus ikarus Public

    Identifying tumor cells at the single-cell level using machine learning

    HTML 44 12

  6. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 41 10

Repositories

Showing 10 of 105 repositories
  • pigx_scrnaseq Public

    Pipeline for analysis of Dropseq single cell data

    BIMSBbioinfo/pigx_scrnaseq’s past year of commit activity
    Python 10 6 28 0 Updated Nov 14, 2024
  • tibanna-bimsb Public Forked from 4dn-dcic/tibanna

    Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

    BIMSBbioinfo/tibanna-bimsb’s past year of commit activity
    Python 0 MIT 28 0 0 Updated Nov 11, 2024
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    BIMSBbioinfo/VoltRon’s past year of commit activity
    R 41 10 1 0 Updated Nov 10, 2024
  • ikarus Public

    Identifying tumor cells at the single-cell level using machine learning

    BIMSBbioinfo/ikarus’s past year of commit activity
    HTML 44 MIT 12 1 0 Updated Nov 10, 2024
  • BIMSBbioinfo/ZarrDataFrame’s past year of commit activity
    R 0 MIT 1 0 0 Updated Nov 7, 2024
  • ZarrArray Public

    Zarr backend for DelayedArray objects

    BIMSBbioinfo/ZarrArray’s past year of commit activity
    R 2 1 3 0 Updated Nov 7, 2024
  • BIMSBbioinfo/HDF5DataFrame’s past year of commit activity
    R 0 MIT 1 0 0 Updated Nov 3, 2024
  • BIMSBbioinfo/ImageArray’s past year of commit activity
    R 0 1 0 0 Updated Oct 30, 2024
  • BIMSBbioinfo/medLLMbenchmark’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 21, 2024
  • CompassDock Public

    Official Implementation of CompassDock

    BIMSBbioinfo/CompassDock’s past year of commit activity
    Python 14 3 0 0 Updated Oct 8, 2024

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