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Change the way lablog viralrecon checks about already downloaded references in refgenie

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#497 In BU-ISCIII/buisciii-tools;

· jaimeozaez opened on Apr 24, 2025

generate_summary_outbreak.py does not gather some stats correctly (characterization template)

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#485 In BU-ISCIII/buisciii-tools;

· jaimeozaez opened on Apr 10, 2025

Review <code>get_LDM_mutations.py</code> for Cases Returning 0% Mutation Match

Status: Open.

#472 In BU-ISCIII/buisciii-tools;

· Aberdur opened on Apr 1, 2025

Create a new buisciii-tools module to check new versions of software

Status: Open.

#427 In BU-ISCIII/buisciii-tools;

· victor5lm opened on Feb 6, 2025

Memory issue when running taxprofiler with Kaiju

Status: Open.

#408 In BU-ISCIII/buisciii-tools;

· albatalavera opened on Jan 20, 2025

BUG: MD5 checking fastq in new-service

Status: Open.

#366 In BU-ISCIII/buisciii-tools;

· saramonzon opened on Nov 18, 2024

System should not exit when template copying fails

Status: Open.

#365 In BU-ISCIII/buisciii-tools;

· saramonzon opened on Nov 18, 2024

Wrong SFTP credentials in delivery email

Status: Open.

#353 In BU-ISCIII/buisciii-tools;

· svarona opened on Oct 23, 2024

viralrecon template remove sorted.bams only for amplicons, not for metagenomic

Status: Open.

#311 In BU-ISCIII/buisciii-tools;

· svarona opened on Aug 12, 2024

Bioinfo-doc does not apply indentations in the email notes

enhancementNew feature or requestNew feature or request

Status: Open.

#308 In BU-ISCIII/buisciii-tools;

· victor5lm opened on Aug 8, 2024

Better handling of scratch module execution

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#206 In BU-ISCIII/buisciii-tools;

· Shettland opened on Mar 1, 2024

Incorrect parsing of file sample names when long read files are present

Status: Open.

#188 In BU-ISCIII/buisciii-tools;

· Daniel-VM opened on Jan 19, 2024