Search results

Implement better testing for <code>id_mapper</code>

id mapper

Status: Open.

Task

#253 In BioDataFuse/pyBiodatafuse;

· jmillanacosta opened on Jul 7, 2025

Simplify WikiPathways property graph predicates to match schema

Status: Open.

#244 In BioDataFuse/pyBiodatafuse;

· jmillanacosta opened on Jun 30, 2025

StringDB not working with non-human data anymore

Status: Open.

#237 In BioDataFuse/pyBiodatafuse;

· djwetstede opened on Jun 23, 2025

Compound Wiki

new annotatorNew resource to be added to the toolNew resource to be added to the tool

Status: Open.

Feature

#230 In BioDataFuse/pyBiodatafuse;

· tabbassidaloii opened on May 9, 2025

Compound list not generating an accurate graph

Status: Open.

#229 In BioDataFuse/pyBiodatafuse;

· djwetstede opened on May 8, 2025

Document how to export <code>rdflib Graph</code>s

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#226 In BioDataFuse/pyBiodatafuse;

· jmillanacosta opened on Apr 28, 2025

<code>NA</code>, <code>np.nan</code>, and <code>pd.NA</code> are not valid JSON standard, return <code>null</code> instead

bugSomething isn't workingSomething isn't working

update annotator

Status: Open.

#220 In BioDataFuse/pyBiodatafuse;

· jmillanacosta opened on Apr 14, 2025

Fix ShEx diagram

rdf

Status: Open.

#199 In BioDataFuse/pyBiodatafuse;

· jmillanacosta opened on Nov 26, 2024

Adding the license of the individual databases

enhancementNew feature or requestNew feature or request

Status: Open.

#193 In BioDataFuse/pyBiodatafuse;

· tabbassidaloii opened on Nov 14, 2024

add annotator for Orphanet (using their API)

biohack2024Work done in elixir-biohackathon-2024Work done in elixir-biohackathon-2024

new annotatorNew resource to be added to the toolNew resource to be added to the tool

Status: Open.

#189 In BioDataFuse/pyBiodatafuse;

· tabbassidaloii opened on Nov 6, 2024

Changing Pubchem API calls with BridgeDB

biohack2024Work done in elixir-biohackathon-2024Work done in elixir-biohackathon-2024

Status: Open.

#188 In BioDataFuse/pyBiodatafuse;

· YojanaGadiya opened on Nov 6, 2024

· 

biohack-2024

Include UniProt protein identifiers for each target gene

enhancementNew feature or requestNew feature or request

rdf

Status: Open.

#177 In BioDataFuse/pyBiodatafuse;

· jmillanacosta opened on Oct 9, 2024