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quantify doesn't have an option to take a fasta/fastq, only a manafest #439

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diekhans opened this issue Mar 7, 2025 · 1 comment
Open

quantify doesn't have an option to take a fasta/fastq, only a manafest #439

diekhans opened this issue Mar 7, 2025 · 1 comment
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command line Issues related to command line enhancement New feature or request mod; quantify

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diekhans commented Mar 7, 2025

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@diekhans diekhans added command line Issues related to command line enhancement New feature or request mod; quantify labels Mar 7, 2025
@diekhans diekhans self-assigned this Mar 7, 2025
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cafelton commented Mar 7, 2025

I think that instead of considering this to be a flair quantify issue, we should more explicitly output quantification from flair collapse. FLAIR quantify was always meant to be for quantifying multiple samples and then comparing them

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command line Issues related to command line enhancement New feature or request mod; quantify
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