This repository contains the standalone form for metadata creation which is embed within the EU-FTICR-MS data processing platform
The form can be seen and used locally by running: python run.py inside the main folder.
Run the script as indicated before, a webpage should automatically open in your browser. If it does not open, go to "http://127.0.0.1:5005/create_metadata/" on a web browser. NB: The code has been developed and tested under a chrome or equivalent browser (e.g. Chromium) - there might be bugs under other browsers.
From the page with the form displayed, in the file selector, choose a folder containing your experiments (the folder should at least contain 1 ".d" Bruker Folder). Import it - it can require two validations in some browsers. Select the desired experiments among those present in the imported folder. Then complete the fields within the form which a relevant to you, and download your .meta file at the bottom of the form.
Here is a screenshot of what the program should look like:
The code has been developed and is compatible with a linux 18.04 distribution. It has also been tested and it is working under Windows 10 operating system.
The code has been tested and is compatible with Python 3.8.10 (Earlier versions of python are normally also compatible). As stated in the requirements.txt, the following libraries are required to run the program:
- Flask==1.0.2
- spike-py==0.99.27
- Werkzeug==0.14.1
- matplotlib==1.16.0
- scipy==1.8.0
- tables==3.7.0
- numpy==1.21.0
- psutil==5.9.0
- python_dateutil==2.8.2