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Feature: Add CNVkit as another CNV caller

enhancementNew feature or requestNew feature or request

Status: Open.

#171 In CCBR/XAVIER;

· samarth8392 opened on Jun 20, 2025

Ensure reference genomes match renee

Status: Open.

#164 In CCBR/XAVIER;

· kelly-sovacool opened on May 16, 2025

Estimate read depth to further filter the somatic calls

enhancementNew feature or requestNew feature or request

Status: Open.

#156 In CCBR/XAVIER;

· samarth8392 opened on Apr 27, 2025

FAQ is blank

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#148 In CCBR/XAVIER;

· kelly-sovacool opened on Apr 16, 2025

deprecation warning - invalid escape sequence

Status: Open.

#106 In CCBR/XAVIER;

· kelly-sovacool opened on Aug 13, 2024

Version not printed "correctly" on headnode

bugSomething isn't workingSomething isn't working

Status: Open.

#71 In CCBR/XAVIER;

· kopardev opened on Jan 27, 2024

cleanup PIPELINES_HOME on FRCE

Status: Open.

#45 In CCBR/XAVIER;

· kopardev opened on Sep 5, 2023

Specify threads/cpus in cluster config

Status: Open.

#42 In CCBR/XAVIER;

· kelly-sovacool opened on Aug 29, 2023

Support custom genomes

enhancementNew feature or requestNew feature or request

Status: Open.

#30 In CCBR/XAVIER;

· kelly-sovacool opened on Aug 16, 2023

Gracefully handle when no reads map to a chromosome

bugSomething isn't workingSomething isn't working

Status: Open.

#28 In CCBR/XAVIER;

· kelly-sovacool opened on Aug 15, 2023

Create config file for pipeline to gather input information

enhancementNew feature or requestNew feature or request

Status: Open.

#6 In CCBR/XAVIER;

· slsevilla opened on Apr 12, 2023