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Add missing dependencies on installed DDC #3152

Add missing dependencies on installed DDC

Add missing dependencies on installed DDC #3152

Workflow file for this run

# Copyright (C) The DDC development team, see COPYRIGHT.md file
#
# SPDX-License-Identifier: MIT
name: test
on:
push: { branches: [ main ] }
pull_request:
concurrency:
group: ${{ github.workflow }}-${{ github.ref == github.ref_protected && github.run_id || github.event.pull_request.number || github.ref }}
cancel-in-progress: true
jobs:
lint:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: DoozyX/[email protected]
with:
source: 'benchmarks/ examples/ include/ddc/ tests/'
exclude: ''
extensions: 'hpp,cpp'
clangFormatVersion: 18
- name: Find trailing whitespaces
run: find . -not -path './vendor/*' -type f \( -name '*.[c|h]pp' -o -name 'CMakeLists.txt' -o -name '*.cmake' -o -name '*.md' -o -name '*.py' \) -exec ./bin/trailing_spaces --Werror '{}' '+'
- name: REUSE Compliance Check
if: always()
uses: fsfe/reuse-action@v4
id_repo:
runs-on: ubuntu-latest
steps:
- name: Identify repository
id: identify_repo
run: |
echo "in_base_repo=${{ (github.event_name == 'push' && github.repository == 'CExA-project/ddc') || github.event.pull_request.head.repo.full_name == 'CExA-project/ddc' }}" >> "$GITHUB_OUTPUT"
outputs: { in_base_repo: '${{ steps.identify_repo.outputs.in_base_repo }}' }
docker-build:
strategy:
fail-fast: false
matrix:
image: ['oldest', 'latest']
backend: ['cpu', 'cuda', 'hip']
needs: id_repo
runs-on: ubuntu-latest
steps:
- name: Free Disk Space (Ubuntu)
uses: jlumbroso/[email protected]
with: { tool-cache: true, large-packages: false }
- name: Checkout built branch
uses: actions/checkout@v4
- name: Login to GitHub Container Registry
uses: docker/login-action@v3
with:
registry: ghcr.io
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
- name: Build
run: |
DOCKER_BUILDKIT=1 docker build \
--build-arg BACKEND=${{matrix.backend}} \
--build-arg BUILDKIT_INLINE_CACHE=1 \
--cache-from ghcr.io/cexa-project/ddc/${{matrix.image}}_${{matrix.backend}} \
-t ghcr.io/cexa-project/ddc/${{matrix.image}}_${{matrix.backend}} \
-t ghcr.io/cexa-project/ddc/${{matrix.image}}_${{matrix.backend}}:${GITHUB_SHA:0:7} \
docker/${{matrix.image}}
- name: Publish image for current SHA
if: needs.id_repo.outputs.in_base_repo == 'true'
run: |
docker push ghcr.io/cexa-project/ddc/${{matrix.image}}_${{matrix.backend}}:${GITHUB_SHA:0:7}
- name: Publish latest (default) image
if: github.event_name == 'push' && github.ref_name == 'main' && needs.id_repo.outputs.in_base_repo == 'true'
run: |
docker push ghcr.io/cexa-project/ddc/${{matrix.image}}_${{matrix.backend}}
- name: Create image tarball
if: needs.id_repo.outputs.in_base_repo == 'false'
run: |
docker save ghcr.io/cexa-project/ddc/${{matrix.image}}_${{matrix.backend}}:${GITHUB_SHA:0:7} > ${{matrix.image}}_${{matrix.backend}}.tar
- name: Generate docker artifact from image
if: needs.id_repo.outputs.in_base_repo == 'false'
uses: actions/upload-artifact@v4
with:
name: ${{matrix.image}}_${{matrix.backend}}-artifact
path: ${{matrix.image}}_${{matrix.backend}}.tar
retention-days: 1
test:
strategy:
fail-fast: false
matrix:
image: ['oldest', 'latest']
backend: ['cpu-gcc', 'cpu-clang', 'cuda', 'hip']
cxx_version: ['17', '20', '23']
cmake_build_type: ['Debug', 'Release']
exclude:
- image: 'oldest' # nvcc 11 only supports C++-17
backend: 'cuda'
cxx_version: '20'
- image: 'oldest' # nvcc 11 only supports C++-17
backend: 'cuda'
cxx_version: '23'
- image: 'latest' # nvcc 12 only supports C++-20
backend: 'cuda'
cxx_version: '23'
runs-on: ubuntu-20.04
needs: [docker-build, id_repo]
steps:
- name: Free Disk Space (Ubuntu)
uses: jlumbroso/[email protected]
with: { tool-cache: true, large-packages: false }
- name: Checkout built branch
uses: actions/checkout@v4
with: { submodules: recursive }
- name: Collect image artifact
if: needs.id_repo.outputs.in_base_repo == 'false'
uses: actions/download-artifact@v4
with:
name: |
${{matrix.image}}_${{fromJSON('{"cpu-gcc":"cpu","cpu-clang":"cpu"}')[matrix.backend] || matrix.backend}}-artifact
- name: Load image artifact into docker
if: needs.id_repo.outputs.in_base_repo == 'false'
run: |
docker load < ${{matrix.image}}_${{fromJSON('{"gcc":"cpu","clang":"cpu"}')[matrix.backend] || matrix.backend}}.tar
rm ${{matrix.image}}_${{fromJSON('{"cpu-gcc":"cpu","cpu-clang":"cpu"}')[matrix.backend] || matrix.backend}}.tar
- name: Test
id: test
run: |
cat<<-'EOF' > run.sh
set -xe
git config --global --add safe.directory '*'
case "${{matrix.backend}}" in
'cuda')
export CC=${CUDA_GCC}
export CXX=${CUDA_GXX}
EXTRA_CMAKE_FLAGS="-DKokkos_ENABLE_CUDA=ON -DKokkos_ENABLE_CUDA_CONSTEXPR=ON -DKokkos_ENABLE_CUDA_RELOCATABLE_DEVICE_CODE=ON -DKokkos_ARCH_AMPERE80=ON"
;;
'hip')
export CC=hipcc
export CXX=hipcc
export CMAKE_PREFIX_PATH=/opt/rocm
EXTRA_CMAKE_FLAGS="-DKokkos_ENABLE_HIP=ON -DKokkos_ENABLE_HIP_RELOCATABLE_DEVICE_CODE=ON -DKokkos_ENABLE_ROCTHRUST=OFF -DKokkos_ARCH_AMD_GFX90A=ON"
;;
'cpu-clang')
export CC=clang
export CXX=clang++
DDC_CMAKE_CXX_FLAGS="-Wextra-semi -Wextra-semi-stmt -Wold-style-cast"
;;
'cpu-gcc')
export CC=gcc
export CXX=g++
DDC_CMAKE_CXX_FLAGS="-Wextra-semi -Wold-style-cast"
if [ 'xDebug' = 'x${{matrix.cmake_build_type}}' ]
then
DDC_CMAKE_CXX_FLAGS="${DDC_CMAKE_CXX_FLAGS} -fno-omit-frame-pointer -fsanitize=address"
fi
;;
esac
export benchmark_ROOT=$PWD/opt/benchmark
export GTest_ROOT=$PWD/opt/gtest
export Kokkos_ROOT=$PWD/opt/kokkos
export KokkosFFT_ROOT=$PWD/opt/kokkos-fft
export KokkosKernels_ROOT=$PWD/opt/kokkos-kernels
cmake \
-DCMAKE_BUILD_TYPE=${{matrix.cmake_build_type}} \
-DCMAKE_CXX_STANDARD=${{matrix.cxx_version}} \
-DBENCHMARK_ENABLE_GTEST_TESTS=OFF \
-DBENCHMARK_ENABLE_TESTING=OFF \
-DBENCHMARK_INSTALL_DOCS=OFF \
-DBENCHMARK_USE_BUNDLED_GTEST=OFF \
-B build \
-S /src/vendor/benchmark
cmake --build build --parallel 2
cmake --install build --prefix $benchmark_ROOT
rm -rf build
cmake \
-DCMAKE_BUILD_TYPE=${{matrix.cmake_build_type}} \
-DCMAKE_CXX_STANDARD=${{matrix.cxx_version}} \
-B build \
-S /src/vendor/googletest
cmake --build build --parallel 2
cmake --install build --prefix $GTest_ROOT
rm -rf build
cmake \
-DCMAKE_BUILD_TYPE=${{matrix.cmake_build_type}} \
-DCMAKE_CXX_STANDARD=${{matrix.cxx_version}} \
-DKokkos_ENABLE_DEPRECATED_CODE_4=OFF \
-DKokkos_ENABLE_DEPRECATION_WARNINGS=OFF \
-DKokkos_ENABLE_SERIAL=ON \
${EXTRA_CMAKE_FLAGS} \
-B build \
-S /src/vendor/kokkos
cmake --build build --parallel 2
cmake --install build --prefix $Kokkos_ROOT
rm -rf build
cmake \
-DCMAKE_BUILD_TYPE=${{matrix.cmake_build_type}} \
-DCMAKE_CXX_STANDARD=${{matrix.cxx_version}} \
-DKokkosFFT_ENABLE_HOST_AND_DEVICE=ON \
-B build \
-S /src/vendor/kokkos-fft
cmake --build build --parallel 2
cmake --install build --prefix $KokkosFFT_ROOT
rm -rf build
cmake \
-DCMAKE_BUILD_TYPE=${{matrix.cmake_build_type}} \
-DCMAKE_CXX_STANDARD=${{matrix.cxx_version}} \
-DKokkosKernels_ADD_DEFAULT_ETI=OFF \
-DKokkosKernels_ENABLE_ALL_COMPONENTS=OFF \
-DKokkosKernels_ENABLE_COMPONENT_BLAS=ON \
-DKokkosKernels_ENABLE_COMPONENT_BATCHED=ON \
-DKokkosKernels_ENABLE_COMPONENT_LAPACK=OFF \
-DKokkosKernels_ENABLE_TPL_BLAS=OFF \
-DKokkosKernels_ENABLE_TPL_CUSOLVER=OFF \
-DKokkosKernels_ENABLE_TPL_LAPACK=OFF \
-B build \
-S /src/vendor/kokkos-kernels
cmake --build build --parallel 2
cmake --install build --prefix $KokkosKernels_ROOT
rm -rf build
cmake \
-DCMAKE_BUILD_TYPE=${{matrix.cmake_build_type}} \
-DCMAKE_CXX_FLAGS="\
-Werror -Wall -Wextra -Wpedantic -Wno-sign-compare -pedantic-errors \
${DDC_CMAKE_CXX_FLAGS}" \
-DCMAKE_CXX_STANDARD=${{matrix.cxx_version}} \
-DDDC_BUILD_BENCHMARKS=ON \
-DDDC_benchmark_DEPENDENCY_POLICY=INSTALLED \
-DDDC_GTest_DEPENDENCY_POLICY=INSTALLED \
-DDDC_Kokkos_DEPENDENCY_POLICY=INSTALLED \
-DDDC_KokkosFFT_DEPENDENCY_POLICY=INSTALLED \
-B build \
-S /src
cmake --build build --parallel 2
case "${{matrix.backend}}" in
'cpu-'*)
ctest --test-dir build --parallel 2 --output-on-failure --timeout 10 --output-junit tests.xml
./build/examples/heat_equation
./build/examples/uniform_heat_equation
./build/examples/non_uniform_heat_equation
./build/examples/heat_equation_spectral
./build/examples/game_of_life
./build/examples/characteristics_advection
;;
esac
EOF
docker run \
--cidfile='docker.cid' \
-v ${PWD}:/src:ro \
ghcr.io/cexa-project/ddc/${{matrix.image}}_${{fromJSON('{"cpu-gcc":"cpu","cpu-clang":"cpu"}')[matrix.backend] || matrix.backend}}:${GITHUB_SHA:0:7} \
bash /src/run.sh
if docker cp "$(cat docker.cid)":/data/tests.xml /home/runner/work/ddc/ddc/tests.xml
then echo "with_report=true" >> "$GITHUB_OUTPUT"
else echo "with_report=false" >> "$GITHUB_OUTPUT"
fi
- name: Publish Test Report
uses: mikepenz/action-junit-report@v4
if: ( success() || failure() ) && steps.test.outputs.with_report == 'true' # always run even if the previous step fails
with:
report_paths: '/home/runner/work/ddc/ddc/tests.xml'
test-with-sanitizer-undefined:
runs-on: ubuntu-latest
needs: [docker-build, id_repo]
steps:
- name: Free Disk Space (Ubuntu)
uses: jlumbroso/[email protected]
with: { tool-cache: true, large-packages: false }
- name: Checkout built branch
uses: actions/checkout@v4
with: { submodules: recursive }
- name: Collect image artifact
if: needs.id_repo.outputs.in_base_repo == 'false'
uses: actions/download-artifact@v4
with:
name: oldest_cpu-artifact
- name: Load image artifact into docker
if: needs.id_repo.outputs.in_base_repo == 'false'
run: |
docker load < oldest_cpu.tar
rm oldest_cpu.tar
- name: Test
id: test
run: |
cat<<-'UBSAN_EOF' > ubsan.supp
vptr:ginkgo/core/solver/solver_base.hpp
UBSAN_EOF
cat<<-'EOF' > run.sh
set -xe
git config --global --add safe.directory '*'
export CC=clang
export CXX=clang++
cmake \
-DDDC_BUILD_BENCHMARKS=ON \
-DCMAKE_BUILD_TYPE=Debug \
-DCMAKE_CXX_STANDARD=17 \
-DKokkos_ENABLE_DEPRECATED_CODE_3=OFF \
-DKokkos_ENABLE_DEPRECATED_CODE_4=OFF \
-DKokkos_ENABLE_DEPRECATION_WARNINGS=OFF \
-DCMAKE_CXX_FLAGS="-fsanitize=undefined -fno-omit-frame-pointer" \
-B build \
-S /src
cmake --build build --parallel 2
export UBSAN_OPTIONS=print_stacktrace=1,halt_on_error=1,suppressions=/src/ubsan.supp
ctest --test-dir build --parallel 2 --output-on-failure --timeout 10 --output-junit tests.xml
./build/examples/heat_equation
./build/examples/uniform_heat_equation
./build/examples/non_uniform_heat_equation
./build/examples/heat_equation_spectral
./build/examples/game_of_life
./build/examples/characteristics_advection
EOF
docker run \
--cidfile='docker.cid' \
-v ${PWD}:/src:ro \
ghcr.io/cexa-project/ddc/oldest_cpu:${GITHUB_SHA:0:7} \
bash /src/run.sh
if docker cp "$(cat docker.cid)":/data/tests.xml /home/runner/work/ddc/ddc/tests.xml
then echo "with_report=true" >> "$GITHUB_OUTPUT"
else echo "with_report=false" >> "$GITHUB_OUTPUT"
fi
- name: Publish Test Report
uses: mikepenz/action-junit-report@v4
if: ( success() || failure() ) && steps.test.outputs.with_report == 'true' # always run even if the previous step fails
with:
report_paths: '/home/runner/work/ddc/ddc/tests.xml'
clang-tidy-test:
runs-on: ubuntu-latest
needs: [docker-build, id_repo]
steps:
- name: Free Disk Space (Ubuntu)
uses: jlumbroso/[email protected]
with: { tool-cache: true, large-packages: false }
- name: Checkout built branch
uses: actions/checkout@v4
with: { submodules: recursive }
- name: Collect image artifact
if: needs.id_repo.outputs.in_base_repo == 'false'
uses: actions/download-artifact@v4
with: { name: 'oldest_cpu-artifact' }
- name: Load image artifact into docker
if: needs.id_repo.outputs.in_base_repo == 'false'
run: |
docker load < oldest_cpu-artifact.tar
rm oldest_cpu-artifact.tar
- name: clang-tidy
run: |
cat<<-'EOF' > run.sh
set -xe
git config --global --add safe.directory '*'
cmake \
-DCMAKE_CXX_COMPILER=clang++ \
-DCMAKE_EXPORT_COMPILE_COMMANDS=ON \
-DDDC_BUILD_BENCHMARKS=ON \
-DBUILD_TESTING=ON \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_CXX_STANDARD=17 \
-DKokkos_ENABLE_DEPRECATED_CODE_4=OFF \
-DKokkos_ENABLE_DEPRECATION_WARNINGS=OFF \
-B build \
-S /src
find /src/benchmarks /src/examples /src/tests -name '*.cpp' -exec clang-tidy -p build -header-filter="(/src/include/ddc/.*|/src/tests/.*)" '{}' '+'
EOF
docker run \
-v ${PWD}:/src:ro ghcr.io/cexa-project/ddc/latest_cpu:${GITHUB_SHA:0:7} \
bash /src/run.sh