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ERROR: Input files reference and features have incompatible contigs

Status: Open.

#36 In CRG-CNAG/CalliNGS-NF;

· kyle-lk opened on Dec 16, 2022

Operator <code>phase</code> is deprecated

Status: Open.

#35 In CRG-CNAG/CalliNGS-NF;

· HudoGriz opened on Dec 6, 2022

Process <code>ASE_KNOWNSNPS (SAMPLE123XYZ)</code> terminated with an error exit status (2) (More then one variant context at position: chr3:XXXXXXX)

Status: Open.

#33 In CRG-CNAG/CalliNGS-NF;

· SINGHVJ-Bio opened on Jul 7, 2022

Documentation issue?

Status: Open.

#32 In CRG-CNAG/CalliNGS-NF;

· pieterlukasse opened on Feb 17, 2022

denylisted genome file

Status: Open.

#31 In CRG-CNAG/CalliNGS-NF;

· okeyoallan opened on Jan 14, 2022

Could not build fai index genome.fa.fai

Status: Open.

#30 In CRG-CNAG/CalliNGS-NF;

· Jokendo-collab opened on Dec 28, 2021

will there be a nf of dna variant calling which need paired samples

Status: Open.

#29 In CRG-CNAG/CalliNGS-NF;

· asmlgkj opened on Nov 6, 2021

mm39 variants / black list

Status: Open.

#23 In CRG-CNAG/CalliNGS-NF;

· sarahbonnin opened on Jun 28, 2021

Process POST_PROCESS_VCF failes when order of chromosomes in result.DP8.vcf differs from that in the GRCm38/Annotation/Variation/Mus_musculus.vcf

Status: Open.

#21 In CRG-CNAG/CalliNGS-NF;

· dylanht opened on Mar 3, 2021

Whether do not generate star index if provide directly?

Status: Open.

#20 In CRG-CNAG/CalliNGS-NF;

· RyanYip-Kat opened on Oct 12, 2020

Reading single end reads

Status: Open.

#19 In CRG-CNAG/CalliNGS-NF;

· Jokendo-collab opened on Sep 22, 2020

containerOverrides for AWS BATCH

Status: Open.

#8 In CRG-CNAG/CalliNGS-NF;

· Dharmendra-G-1 opened on May 24, 2019