test: update bun test workflow to remove any nodejs dependency

.github/workflows/test-bun.yml

@@ -18,20 +18,45 @@ jobs:
     runs-on: buildjet-4vcpu-ubuntu-2204
     steps:
       - uses: actions/checkout@v4
-      - name: Setup Node
-        uses: actions/setup-node@v4
-        with:
-          node-version: 22
-          cache: yarn
       - uses: oven-sh/setup-bun@v2
         with:
           bun-version: latest
+
       - name: Install Yarn
         run: bun install -g npm:yarn
+
+      # This is ideal way to install with Yarn and not change the lock file
+      # But it is causing the error like SSL Error: https://registry.npmjs.org/<package-name>.tgz does not support SSL
+      # - name: Install
+      #   run: HTTP_PROXY= HTTPS_PROXY= NO_PROXY="*" bunx --bun yarn install --ignore-engines --frozen-lockfile --registry https://registry.npmjs.org/
+
+      - name: Install deps for Bun to work with node native bindings
+        run: bun install -g npm:node-gyp-build
+
       - name: Install
-        run: yarn install --frozen-lockfile
+        run: bun install --no-save || true
+
+      # Bun is not installing binaries for the packages
+      # defined as dev dependencies and only been listed
+      # in the root of the workspace. Reinstalling those will
+      # make sure their binaries are available in `node_modules/.bin`
+      - name: Install binaries for tools
+        run: |
+          export V=$(jq -r .version node_modules/typescript/package.json) && bun remove typescript && bun install --dev typescript@$V
+          export V=$(jq -r .version node_modules/@biomejs/biome) && bun remove @biomejs/biome && bun install --dev @biomejs/biome@$V
+          export V=$(jq -r .version node_modules/lerna) && bun remove lerna && bun install --dev lerna@$V
+          export V=$(jq -r .version node_modules/vitest) && bun remove vitest && bun install --dev vitest@$V
+          bun install @lerna-lite/run
+
+      # For vitest it is even stranger that `bun install` is not generating binary
+      # So have to install it as global package
+      - name: Install vitest binary
+        run: |
+          export V=$(jq -r .version node_modules/vitest) && bun remove vitest && bun install -g vitest@$V
+
       - name: Build
-        run: yarn build
+        run: bun run --bun build
+
       - name: Unit Tests
         # These packages are not testable yet in Bun because of `@chainsafe/blst` dependency.
         run: excluded=(beacon-node prover light-client cli); for pkg in packages/*/; do [[ ! " ${excluded[@]} " =~ " $(basename "$pkg") " ]] && echo "Testing $(basename "$pkg")" && (cd "$pkg" && bun run --bun test:unit); done

bunfig.toml

@@ -0,0 +1,3 @@
+[install]
+registry = "https://registry.npmjs.org/"
+linker = "hoisted"

package.json

@@ -42,9 +42,9 @@
   },
   "devDependencies": {
     "@actions/core": "^1.11.1",
+    "@biomejs/biome": "^1.9.4",
     "@chainsafe/benchmark": "^1.2.3",
     "@chainsafe/biomejs-config": "^0.1.2",
-    "@biomejs/biome": "^1.9.4",
     "@types/node": "^20.12.8",
     "@vitest/browser": "3.0.9",
     "@vitest/coverage-v8": "3.0.9",
@@ -82,5 +82,11 @@
     "loupe": "^2.3.6",
     "testcontainers/**/nan": "^2.19.0",
     "vitest": "3.0.9"
-  }
+  },
+  "trustedDependencies": [
+    "@biomejs/biome",
+    "classic-level",
+    "esbuild",
+    "nx"
+  ]
 }

packages/beacon-node/package.json

@@ -132,7 +132,7 @@
     "@lodestar/validator": "^1.33.0",
     "@multiformats/multiaddr": "^12.1.3",
     "datastore-core": "^10.0.2",
-    "datastore-level": "^11.0.1",
+    "datastore-level": "^11.0.3",
     "deepmerge": "^4.3.1",
     "fastify": "^5.2.1",
     "interface-datastore": "^8.3.0",
@@ -150,7 +150,6 @@
     "xxhash-wasm": "1.0.2"
   },
   "devDependencies": {
-    "@types/datastore-level": "^3.0.0",
     "@types/qs": "^6.9.7",
     "@types/tmp": "^0.2.3",
     "it-drain": "^3.0.3",