R scripts from Ze Zhang often used in DNA methylation analyses. Not the most clean but should be helpful

Stores data for capsule-related projects

Measurement of 5hmC in pediatric cns tumors

Modular framework for deep learning predictions on methylation data.

Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.

VAE methylation analysis using the Tybalt model developed by Way et al.

DNA methylation analysis using VAE

R code repository for statistical analysis and data visualization of manuscript "Genome-wide DNA methylation profiling shows a distinct epigenetic signature associated with Lung Macrophages in cystic fibrosis"