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Add analysis tool for nsight reports
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Add analysis to more jobs
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charleskawczynski committed Nov 12, 2024
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6 changes: 6 additions & 0 deletions .buildkite/analysis/Project.toml
Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
[deps]
ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"
CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
UnicodePlots = "b8865327-cd53-5732-bb35-84acbb429228"
VegaLite = "112f6efa-9a02-5b7d-90c0-432ed331239a"
53 changes: 53 additions & 0 deletions .buildkite/gpu_pipeline/pipeline.yml
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,11 @@ steps:
- julia --project=perf -e 'using CUDA; CUDA.precompile_runtime()'
- julia --project=perf -e 'using Pkg; Pkg.status()'

- echo "--- Instantiate analysis"
- julia --project=.buildkite/analysis -e 'using Pkg; Pkg.instantiate(;verbose=true)'
- julia --project=.buildkite/analysis -e 'using Pkg; Pkg.precompile()'
- julia --project=.buildkite/analysis -e 'using Pkg; Pkg.status()'

- echo "--- Download artifacts"
- julia --project=examples artifacts/download_artifacts.jl

Expand All @@ -55,6 +60,9 @@ steps:
julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${GPU_CONFIG_PATH}target_gpu_implicit_baroclinic_wave.yml
--job_id target_gpu_implicit_baroclinic_wave
- nsys stats --report cuda_gpu_trace target_gpu_implicit_baroclinic_wave/output_active/report.nsys-rep --output target_gpu_implicit_baroclinic_wave/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir target_gpu_implicit_baroclinic_wave/output_active/
artifact_paths: "target_gpu_implicit_baroclinic_wave/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand All @@ -72,6 +80,9 @@ steps:
julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${GPU_CONFIG_PATH}gpu_hs_rhoe_equil_55km_nz63_0M.yml
--job_id gpu_hs_rhoe_equil_55km_nz63_0M
- nsys stats --report cuda_gpu_trace gpu_hs_rhoe_equil_55km_nz63_0M/output_active/report.nsys-rep --output gpu_hs_rhoe_equil_55km_nz63_0M/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir gpu_hs_rhoe_equil_55km_nz63_0M/output_active/
artifact_paths: "gpu_hs_rhoe_equil_55km_nz63_0M/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand All @@ -90,6 +101,10 @@ steps:
julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${GPU_CONFIG_PATH}gpu_hs_rhoe_equil_55km_nz63_0M.yml
--job_id gpu_hs_rhoe_equil_55km_nz63_0M_4process
# TODO: add analysis for all gpu devices
- nsys stats --report cuda_gpu_trace gpu_hs_rhoe_equil_55km_nz63_0M_4process/output_active/report-0.nsys-rep --output gpu_hs_rhoe_equil_55km_nz63_0M_4process/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir gpu_hs_rhoe_equil_55km_nz63_0M_4process/output_active/
artifact_paths: "gpu_hs_rhoe_equil_55km_nz63_0M_4process/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand All @@ -110,6 +125,10 @@ steps:
julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${GPU_CONFIG_PATH}target_gpu_implicit_baroclinic_wave.yml
--job_id target_gpu_implicit_baroclinic_wave_4process
# TODO: add analysis for all gpu devices
- nsys stats --report cuda_gpu_trace target_gpu_implicit_baroclinic_wave_4process/output_active/report-0.nsys-rep --output target_gpu_implicit_baroclinic_wave_4process/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir target_gpu_implicit_baroclinic_wave_4process/output_active/
artifact_paths: "target_gpu_implicit_baroclinic_wave_4process/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand All @@ -131,6 +150,9 @@ steps:
nsys profile --delay 100 --trace=nvtx,mpi,cuda,osrt --output=gpu_aquaplanet_dyamond_diag_1process/output_active/report julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${GPU_CONFIG_PATH}gpu_aquaplanet_dyamond_diag_1process.yml
--job_id gpu_aquaplanet_dyamond_diag_1process
- nsys stats --report cuda_gpu_trace gpu_aquaplanet_dyamond_diag_1process/output_active/report.nsys-rep --output gpu_aquaplanet_dyamond_diag_1process/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir gpu_aquaplanet_dyamond_diag_1process/output_active/
artifact_paths: "gpu_aquaplanet_dyamond_diag_1process/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand All @@ -152,6 +174,9 @@ steps:
julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${GPU_CONFIG_PATH}gpu_aquaplanet_dyamond_ss.yml
--job_id gpu_aquaplanet_dyamond_ss_1process
- nsys stats --report cuda_gpu_trace gpu_aquaplanet_dyamond_ss_1process/output_active/report.nsys-rep --output gpu_aquaplanet_dyamond_ss_1process/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir gpu_aquaplanet_dyamond_ss_1process/output_active/
artifact_paths: "gpu_aquaplanet_dyamond_ss_1process/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand All @@ -169,9 +194,14 @@ steps:
- mkdir -p gpu_aquaplanet_dyamond_ss_2process
- >
srun --cpu-bind=threads --cpus-per-task=4
nsys profile --delay 100 --trace=nvtx,mpi,cuda,osrt --output=gpu_aquaplanet_dyamond_ss_2process/output_active/report
julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${GPU_CONFIG_PATH}gpu_aquaplanet_dyamond_ss.yml
--job_id gpu_aquaplanet_dyamond_ss_2process
# TODO: add analysis for all gpu devices
- nsys stats --report cuda_gpu_trace gpu_aquaplanet_dyamond_ss_2process/output_active/report-0.nsys-rep --output gpu_aquaplanet_dyamond_ss_2process/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir gpu_aquaplanet_dyamond_ss_2process/output_active/
artifact_paths: "gpu_aquaplanet_dyamond_ss_2process/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand All @@ -189,9 +219,14 @@ steps:
- mkdir -p gpu_aquaplanet_dyamond_ss_4process
- >
srun --cpu-bind=threads --cpus-per-task=4
nsys profile --delay 100 --trace=nvtx,mpi,cuda,osrt --output=gpu_aquaplanet_dyamond_ss_4process/output_active/report
julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${GPU_CONFIG_PATH}gpu_aquaplanet_dyamond_ss.yml
--job_id gpu_aquaplanet_dyamond_ss_4process
# TODO: add analysis for all gpu devices
- nsys stats --report cuda_gpu_trace gpu_aquaplanet_dyamond_ss_4process/output_active/report-0.nsys-rep --output gpu_aquaplanet_dyamond_ss_4process/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir gpu_aquaplanet_dyamond_ss_4process/output_active/
artifact_paths: "gpu_aquaplanet_dyamond_ss_4process/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand Down Expand Up @@ -227,9 +262,13 @@ steps:
- mkdir -p gpu_aquaplanet_dyamond_ws_1process
- >
srun --cpu-bind=threads --cpus-per-task=4
nsys profile --delay 100 --trace=nvtx,mpi,cuda,osrt --output=gpu_aquaplanet_dyamond_ws_1process/output_active/report
julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${GPU_CONFIG_PATH}gpu_aquaplanet_dyamond_ws_1process.yml
--job_id gpu_aquaplanet_dyamond_ws_1process
- nsys stats --report cuda_gpu_trace gpu_aquaplanet_dyamond_ws_1process/output_active/report.nsys-rep --output gpu_aquaplanet_dyamond_ws_1process/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir gpu_aquaplanet_dyamond_ws_1process/output_active/
artifact_paths: "gpu_aquaplanet_dyamond_ws_1process/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand All @@ -247,9 +286,13 @@ steps:
- mkdir -p gpu_aquaplanet_dyamond_ws_2process
- >
srun --cpu-bind=threads --cpus-per-task=4
nsys profile --delay 100 --trace=nvtx,mpi,cuda,osrt --output=gpu_aquaplanet_dyamond_ws_2process/output_active/report
julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${GPU_CONFIG_PATH}gpu_aquaplanet_dyamond_ws_2process.yml
--job_id gpu_aquaplanet_dyamond_ws_2process
- nsys stats --report cuda_gpu_trace gpu_aquaplanet_dyamond_ws_2process/output_active/report-0.nsys-rep --output gpu_aquaplanet_dyamond_ws_2process/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir gpu_aquaplanet_dyamond_ws_2process/output_active/
artifact_paths: "gpu_aquaplanet_dyamond_ws_2process/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand All @@ -267,9 +310,13 @@ steps:
- mkdir -p gpu_aquaplanet_dyamond_ws_4process
- >
srun --cpu-bind=threads --cpus-per-task=4
nsys profile --delay 100 --trace=nvtx,mpi,cuda,osrt --output=gpu_aquaplanet_dyamond_ws_4process/output_active/report
julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${GPU_CONFIG_PATH}gpu_aquaplanet_dyamond_ws_4process.yml
--job_id gpu_aquaplanet_dyamond_ws_4process
- nsys stats --report cuda_gpu_trace gpu_aquaplanet_dyamond_ws_4process/output_active/report-0.nsys-rep --output gpu_aquaplanet_dyamond_ws_4process/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir gpu_aquaplanet_dyamond_ws_4process/output_active/
artifact_paths: "gpu_aquaplanet_dyamond_ws_4process/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand Down Expand Up @@ -311,6 +358,9 @@ steps:
julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${MODEL_CONFIG_PATH}aquaplanet_diagedmf.yml
--job_id gpu_aquaplanet_diagedmf
- nsys stats --report cuda_gpu_trace gpu_aquaplanet_diagedmf/output_active/report.nsys-rep --output gpu_aquaplanet_diagedmf/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir gpu_aquaplanet_diagedmf/output_active/
artifact_paths: "gpu_aquaplanet_diagedmf/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand Down Expand Up @@ -345,6 +395,9 @@ steps:
julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl
--config_file ${MODEL_CONFIG_PATH}aquaplanet_progedmf.yml
--job_id gpu_aquaplanet_progedmf
- nsys stats --report cuda_gpu_trace gpu_aquaplanet_progedmf/output_active/report.nsys-rep --output gpu_aquaplanet_progedmf/output_active/ --format csv
- julia --project=.buildkite/analysis .buildkite/nsight_analysis.jl --out_dir gpu_aquaplanet_progedmf/output_active/
artifact_paths: "gpu_aquaplanet_progedmf/output_active/*"
env:
CLIMACOMMS_DEVICE: "CUDA"
Expand Down
219 changes: 219 additions & 0 deletions .buildkite/nsight_analysis.jl
Original file line number Diff line number Diff line change
@@ -0,0 +1,219 @@
# nsys stats --report cuda_gpu_trace report.nsys-rep --output . --format csv

using VegaLite, UnicodePlots, CSV, DataFrames, ArgParse

function parse_commandline()
s = ArgParse.ArgParseSettings()
ArgParse.@add_arg_table! s begin
"--out_dir"
help = "Output data directory"
arg_type = String
end
return ArgParse.parse_args(ARGS, s)
end

function get_params()
parsed_args = parse_commandline()
return parsed_args["out_dir"]
end

output_dir = get_params()

@time "Load CSV file" begin
if !@isdefined(data_and_init)
data_and_init = cd(output_dir) do
CSV.read("_cuda_gpu_trace.csv", DataFrame)
end
end
end

"""
filter_out_initialization(data;
keep_n_minimum_kernels = 1000,
gap_percent_threshold = 10
)
We do not want to include initialization kernels in our analysis,
since they are not representative of our runtime performance. Therefore,
We iterate using a heuristic to filter out initialization:
- from the start to halfway, find the largest gap between kernel calls, and filter
out from the start to that point.
- If the next gap is within some percentage (`gap_percent_threshold`), terminate
- If trimming results in fewer than `keep_n_minimum_kernels`, terminate
"""
function filter_out_initialization(
data;
keep_n_minimum_kernels = 1000,
gap_percent_threshold = 10,
)
t_start = data[1, "Start (ns)"]
t_end = data[end, "Start (ns)"]

# filter until maximum kernel duration is in the
# distribution of the remaining kernels:
halfway(x) = Int(round(length(x[!, "Name"]) / 2))
continue_trimming = true
max_gaps = Int[]
function maximum_gap(data)
R = 1:halfway(data)
(max_gap, i_max) = findmax(identity, diff(data[R, "Start (ns)"]))
i_next_start = i_max + 1
return (max_gap, i_next_start)
end
i_iter = 0
(next_max_gap, i_next_start) = maximum_gap(data)
exit_reason = 0
while continue_trimming
@info "Trimming initialization data. Iteration $i_iter"
push!(max_gaps, next_max_gap)
# i_longest_remaining_kernel = findfirst(x -> x == max_gaps[end], data[1:halfway(data), "Duration (ns)"])
new_data = data[i_next_start:end, :]
if length(new_data[!, "Name"]) < keep_n_minimum_kernels
exit_reason = "trimming more kernels results in fewer than $keep_n_minimum_kernels kernels left"
@warn "New data length would have been too short: $(length(new_data[!, "Name"]))"
continue_trimming = false
else
data = new_data
# If the kernel we're filtering out now is within some
# percentage (gap_percent_threshold) of the largest
# one that remains, then stop filtering
(next_max_gap, i_next_start) = maximum_gap(data)
if (max_gaps[end] - next_max_gap) / max_gaps[end] * 100
gap_percent_threshold
continue_trimming = false
exit_reason = "next gap between kernels is similar to previously filtered one"
end
end
i_iter += 1
i_iter > 10^6 && error("Too many iterations")
end

# Now, let's trim the end by 10%
N = length(data[!, "Name"])
N_end = Int(round(N * 0.9))
data = data[1:N_end, :]
t_start_new = data[1, "Start (ns)"]
@info "Original start time (s) : $(t_start / 10^9)"
@info "New start time (s) : $(t_start_new / 10^9)"
@info "Fraction of simulation trimmed: $((t_start_new-t_start)/(t_end-t_start))"
@info "exit_reason : $(exit_reason)"

return data
end

@time "Filter CSV" begin
data = filter_out_initialization(data_and_init)
end

const logged_uncaught_cases = String[]

function group_name(s)
transform_name = Dict()
transform_name["knl_copyto_"] = "copyto"
transform_name["copyto_stencil_kernel"] = "stencil"
transform_name["CUDA memcpy"] = "CUDA memcpy"
transform_name["knl_fill_"] = "fill"
transform_name["CUDA memset"] = "CUDA memset"
transform_name["CuKernelContext"] = "CuKernelContext"
transform_name["knl_fused_copyto"] = "fused_copyto"
transform_name["knl_fused_copyto_linear"] = "fused_copyto_linear"
transform_name["multiple_field_solve_kernel_"] = "multiple_field_solve"
transform_name["single_field_solve_kernel"] = "single_field_solve_kernel"
transform_name["copyto_spectral_kernel_"] = "spectral"
transform_name["bycolumn_kernel"] = "bycolumn_reduce"
transform_name["dss_load_perimeter_data_kernel"] = "dss_load"
transform_name["dss_unload_perimeter_data_kernel"] = "dss_unload"
transform_name["dss_local_kernel"] = "dss_local"
transform_name["dss_transform_kernel"] = "dss_transform"
transform_name["dss_untransform_kernel"] = "dss_untransform"
transform_name["dss_local_ghost_kernel"] = "dss_local_ghost"
transform_name["fill_send_buffer_kernel"] = "dss_fill_send_buffer"
transform_name["load_from_recv_buffer_kernel"] = "dss_load_from_recv"
transform_name["dss_ghost_kernel"] = "dss_ghost"
transform_name["rte_sw_2stream_solve"] = "RRTMGP_RTE_sw"
transform_name["rte_lw_2stream_solve"] = "RRTMGP_RTE_lw"
transform_name["compute_col_gas_CUDA"] = "RRTMGP_col_gas"
transform_name["set_interpolated_values_kernel"] = "remapping"
if s in values(transform_name)
return s # already grouped
else
for k in keys(transform_name)
occursin(k, s) && return transform_name[k]
end
end
if !(s in logged_uncaught_cases)
@warn "Uncaught case for $s"
push!(logged_uncaught_cases, s)
end
return "Unknown"
end

function vega_pie_chart(data)
data[:, "Name"] .= group_name.(data[:, "Name"])
sort!(data, order("Duration (ns)", by = identity))

data_duration = DataFrame(
duration = data[!, "Duration (ns)"] / 10^3,
name = data[!, "Name"],
)
data_duration |>
@vlplot(
:arc,
theta = :duration,
color = "name:n",
view = {stroke = nothing}
) |>
save("pie_chart.png")
end

function sorted_barplot(x₀, y₀; title)
x = deepcopy(x₀)
y = deepcopy(y₀)
perm = sortperm(y)
permute!(x, perm)
permute!(y, perm)
bp = UnicodePlots.barplot(x, y; title)
println(bp)
end


function unicode_barchart(data)
data[:, "Name"] .= group_name.(data[:, "Name"])
names₀ = collect(Set(data[!, "Name"]))
duration_sum = sum(data[!, "Duration (ns)"])
bar_data = Float64[]
average_kernel_cost = Float64[]
n_kernels = Int[]
for name in names₀
df_name = filter(row -> group_name(row.Name) == name, data; view = true)
nk = length(df_name[!, "Duration (ns)"])
s = sum(df_name[!, "Duration (ns)"])
push!(bar_data, s / duration_sum * 100)
push!(average_kernel_cost, s / nk / 10^3)
push!(n_kernels, nk)
end
N = length(data[:, "Name"])
@info "Statistics across $N total kernels"

sorted_barplot(names₀, bar_data; title = "Kernel duration percentage")
sorted_barplot(names₀, n_kernels; title = "Number of kernels")
sorted_barplot(
names₀,
average_kernel_cost;
title = "Average kernel duration (μs)",
)

for name in names₀
df_name = filter(row -> group_name(row.Name) == name, data; view = true)
duration_ms = df_name[!, "Duration (ns)"] ./ 10^9 .* 10^3
h = UnicodePlots.histogram(
duration_ms;
title = "$name duration distribution (ms)",
)
println(h)
end
end

@time "Make unicode bar chart" unicode_barchart(data)
# @time "Make vega pie chart" vega_pie_chart(data)

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