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Add YugabyteDB (without results because queries on AWS EC2 c6a.4xlarge w/ 500GB gp2 run tremendously slow) #380

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20 changes: 20 additions & 0 deletions yugabytedb/README.md
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> YugabyteDB is a PostgreSQL-compatible, high-performance, cloud-native, distributed SQL database.
[YugabyteDB GitHub repository](https://github.com/yugabyte/yugabyte-db)

> [!WARNING]
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Let's remove the warning and include results for EC2, even if slow. Being able to compare databases on the same hardware using the same queries/data is the whole point of ClickBench :-)

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@michaelkoepf michaelkoepf Jun 5, 2025

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should i run it with or without modified OS settings (ulimits, transparent huge pages, etc.)?

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If I see correctly, hugepages are on by default anyways and the other custom OS settings are hard limits on the number of files, CPU etc. which should also have reasonable defaults.

In that sense, I don't think we don't need to change OS settings.

> Currently, no results are provided on AWS EC2 (see below).
**Notes:**

- To use the [OS settings recommended by YugabyteDB](https://docs.yugabyte.com/preview/deploy/manual-deployment/system-config), first run `benchmark.sh setup`.
- To run the benchmark, run `benchmark.sh run`.
- On an AWS EC2 c6a.4xlarge (500GB gp2) instance, even simple queries run tremendously slow. On a local machine (AMD Ryzen 5 5600X, 32GB RAM, 1TB NVMe drive) inside a Docker container, queries run notably faster.
- Q1:
- EC2: `[1306.72,1268.44,1269.34]`
- Local: `[329.484,328.405,327.32]`
- Q2:
- EC2: `[1788.86,2214.2,2214.08]`
- Local: `[335.95,320.728,294.426]`

The data loading time is comparable on both machines (~78 minutes).
41 changes: 41 additions & 0 deletions yugabytedb/benchmark.sh
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#!/bin/bash

YDBVERSION=2.25.2.0
YDBBUILD=b359

sudo apt-get update
sudo apt-get upgrade -y

# Needed dependencies
sudo apt-get install python3 locales -y
sudo locale-gen en_US.UTF-8
# Should now include en_US.utf8
locale -a

wget https://software.yugabyte.com/releases/$YDBVERSION/yugabyte-$YDBVERSION-$YDBBUILD-linux-x86_64.tar.gz
tar xvfz yugabyte-$YDBVERSION-$YDBBUILD-linux-x86_64.tar.gz
mv ./yugabyte-$YDBVERSION ./yugabyte
# Should print "INSTALL PASSED"
./yugabyte/bin/post_install.sh

./yugabyte/bin/yugabyted start --advertise_address 127.0.0.1 --ui false --background true

wget --continue 'https://datasets.clickhouse.com/hits_compatible/hits.tsv.gz'
gzip -d -f hits.tsv.gz

./yugabyte/bin/ysqlsh -U yugabyte -c "CREATE DATABASE test;"
./yugabyte/bin/ysqlsh -U yugabyte -c "ALTER DATABASE test SET temp_file_limit=-1;"
./yugabyte/bin/ysqlsh -U yugabyte -d test -c "DROP DATABASE IF EXISTS yugabyte;"
./yugabyte/bin/ysqlsh -U yugabyte -d test -t < create.sql

# takes around ~78 minutes on AWS EC2 c6a.4xlarge (500GB gp2)
time ./load.sh

./run.sh 2>&1 | tee log.txt

# 76977854454 bytes
./yugabyte/bin/ysqlsh -U yugabyte -d test -c "SELECT pg_total_relation_size('public.hits') AS TOTAL_TABLE_SIZE_IN_BYTES;"

grep -oP 'Time: \d+\.\d+ ms' log.txt |
sed -r -e 's/Time: ([0-9]+\.[0-9]+) ms/\1/' |
awk '{ if (i % 3 == 0) { printf "[" }; printf $1 / 1000; if (i % 3 != 2) { printf "," } else { print "]," }; ++i; }'
108 changes: 108 additions & 0 deletions yugabytedb/create.sql
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CREATE TABLE hits
(
WatchID BIGINT NOT NULL,
JavaEnable SMALLINT NOT NULL,
Title TEXT NOT NULL,
GoodEvent SMALLINT NOT NULL,
EventTime TIMESTAMP NOT NULL,
EventDate Date NOT NULL,
CounterID INTEGER NOT NULL,
ClientIP INTEGER NOT NULL,
RegionID INTEGER NOT NULL,
UserID BIGINT NOT NULL,
CounterClass SMALLINT NOT NULL,
OS SMALLINT NOT NULL,
UserAgent SMALLINT NOT NULL,
URL TEXT NOT NULL,
Referer TEXT NOT NULL,
IsRefresh SMALLINT NOT NULL,
RefererCategoryID SMALLINT NOT NULL,
RefererRegionID INTEGER NOT NULL,
URLCategoryID SMALLINT NOT NULL,
URLRegionID INTEGER NOT NULL,
ResolutionWidth SMALLINT NOT NULL,
ResolutionHeight SMALLINT NOT NULL,
ResolutionDepth SMALLINT NOT NULL,
FlashMajor SMALLINT NOT NULL,
FlashMinor SMALLINT NOT NULL,
FlashMinor2 TEXT NOT NULL,
NetMajor SMALLINT NOT NULL,
NetMinor SMALLINT NOT NULL,
UserAgentMajor SMALLINT NOT NULL,
UserAgentMinor VARCHAR(255) NOT NULL,
CookieEnable SMALLINT NOT NULL,
JavascriptEnable SMALLINT NOT NULL,
IsMobile SMALLINT NOT NULL,
MobilePhone SMALLINT NOT NULL,
MobilePhoneModel TEXT NOT NULL,
Params TEXT NOT NULL,
IPNetworkID INTEGER NOT NULL,
TraficSourceID SMALLINT NOT NULL,
SearchEngineID SMALLINT NOT NULL,
SearchPhrase TEXT NOT NULL,
AdvEngineID SMALLINT NOT NULL,
IsArtifical SMALLINT NOT NULL,
WindowClientWidth SMALLINT NOT NULL,
WindowClientHeight SMALLINT NOT NULL,
ClientTimeZone SMALLINT NOT NULL,
ClientEventTime TIMESTAMP NOT NULL,
SilverlightVersion1 SMALLINT NOT NULL,
SilverlightVersion2 SMALLINT NOT NULL,
SilverlightVersion3 INTEGER NOT NULL,
SilverlightVersion4 SMALLINT NOT NULL,
PageCharset TEXT NOT NULL,
CodeVersion INTEGER NOT NULL,
IsLink SMALLINT NOT NULL,
IsDownload SMALLINT NOT NULL,
IsNotBounce SMALLINT NOT NULL,
FUniqID BIGINT NOT NULL,
OriginalURL TEXT NOT NULL,
HID INTEGER NOT NULL,
IsOldCounter SMALLINT NOT NULL,
IsEvent SMALLINT NOT NULL,
IsParameter SMALLINT NOT NULL,
DontCountHits SMALLINT NOT NULL,
WithHash SMALLINT NOT NULL,
HitColor CHAR NOT NULL,
LocalEventTime TIMESTAMP NOT NULL,
Age SMALLINT NOT NULL,
Sex SMALLINT NOT NULL,
Income SMALLINT NOT NULL,
Interests SMALLINT NOT NULL,
Robotness SMALLINT NOT NULL,
RemoteIP INTEGER NOT NULL,
WindowName INTEGER NOT NULL,
OpenerName INTEGER NOT NULL,
HistoryLength SMALLINT NOT NULL,
BrowserLanguage TEXT NOT NULL,
BrowserCountry TEXT NOT NULL,
SocialNetwork TEXT NOT NULL,
SocialAction TEXT NOT NULL,
HTTPError SMALLINT NOT NULL,
SendTiming INTEGER NOT NULL,
DNSTiming INTEGER NOT NULL,
ConnectTiming INTEGER NOT NULL,
ResponseStartTiming INTEGER NOT NULL,
ResponseEndTiming INTEGER NOT NULL,
FetchTiming INTEGER NOT NULL,
SocialSourceNetworkID SMALLINT NOT NULL,
SocialSourcePage TEXT NOT NULL,
ParamPrice BIGINT NOT NULL,
ParamOrderID TEXT NOT NULL,
ParamCurrency TEXT NOT NULL,
ParamCurrencyID SMALLINT NOT NULL,
OpenstatServiceName TEXT NOT NULL,
OpenstatCampaignID TEXT NOT NULL,
OpenstatAdID TEXT NOT NULL,
OpenstatSourceID TEXT NOT NULL,
UTMSource TEXT NOT NULL,
UTMMedium TEXT NOT NULL,
UTMCampaign TEXT NOT NULL,
UTMContent TEXT NOT NULL,
UTMTerm TEXT NOT NULL,
FromTag TEXT NOT NULL,
HasGCLID SMALLINT NOT NULL,
RefererHash BIGINT NOT NULL,
URLHash BIGINT NOT NULL,
CLID INTEGER NOT NULL
);
9 changes: 9 additions & 0 deletions yugabytedb/load.sh
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#!/bin/bash

set -eux

time ./yugabyte/bin/ysqlsh -U yugabyte -d test <<'EOF'
\copy hits FROM 'hits.tsv';
EOF

time ./yugabyte/bin/ysqlsh -U yugabyte -d test -t -c 'ANALYZE hits;'
43 changes: 43 additions & 0 deletions yugabytedb/queries.sql
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SELECT COUNT(*) FROM hits;
SELECT COUNT(*) FROM hits WHERE AdvEngineID <> 0;
SELECT SUM(AdvEngineID), COUNT(*), AVG(ResolutionWidth) FROM hits;
SELECT AVG(UserID) FROM hits;
SELECT COUNT(DISTINCT UserID) FROM hits;
SELECT COUNT(DISTINCT SearchPhrase) FROM hits;
SELECT MIN(EventDate), MAX(EventDate) FROM hits;
SELECT AdvEngineID, COUNT(*) FROM hits WHERE AdvEngineID <> 0 GROUP BY AdvEngineID ORDER BY COUNT(*) DESC;
SELECT RegionID, COUNT(DISTINCT UserID) AS u FROM hits GROUP BY RegionID ORDER BY u DESC LIMIT 10;
SELECT RegionID, SUM(AdvEngineID), COUNT(*) AS c, AVG(ResolutionWidth), COUNT(DISTINCT UserID) FROM hits GROUP BY RegionID ORDER BY c DESC LIMIT 10;
SELECT MobilePhoneModel, COUNT(DISTINCT UserID) AS u FROM hits WHERE MobilePhoneModel <> '' GROUP BY MobilePhoneModel ORDER BY u DESC LIMIT 10;
SELECT MobilePhone, MobilePhoneModel, COUNT(DISTINCT UserID) AS u FROM hits WHERE MobilePhoneModel <> '' GROUP BY MobilePhone, MobilePhoneModel ORDER BY u DESC LIMIT 10;
SELECT SearchPhrase, COUNT(*) AS c FROM hits WHERE SearchPhrase <> '' GROUP BY SearchPhrase ORDER BY c DESC LIMIT 10;
SELECT SearchPhrase, COUNT(DISTINCT UserID) AS u FROM hits WHERE SearchPhrase <> '' GROUP BY SearchPhrase ORDER BY u DESC LIMIT 10;
SELECT SearchEngineID, SearchPhrase, COUNT(*) AS c FROM hits WHERE SearchPhrase <> '' GROUP BY SearchEngineID, SearchPhrase ORDER BY c DESC LIMIT 10;
SELECT UserID, COUNT(*) FROM hits GROUP BY UserID ORDER BY COUNT(*) DESC LIMIT 10;
SELECT UserID, SearchPhrase, COUNT(*) FROM hits GROUP BY UserID, SearchPhrase ORDER BY COUNT(*) DESC LIMIT 10;
SELECT UserID, SearchPhrase, COUNT(*) FROM hits GROUP BY UserID, SearchPhrase LIMIT 10;
SELECT UserID, extract(minute FROM EventTime) AS m, SearchPhrase, COUNT(*) FROM hits GROUP BY UserID, m, SearchPhrase ORDER BY COUNT(*) DESC LIMIT 10;
SELECT UserID FROM hits WHERE UserID = 435090932899640449;
SELECT COUNT(*) FROM hits WHERE URL LIKE '%google%';
SELECT SearchPhrase, MIN(URL), COUNT(*) AS c FROM hits WHERE URL LIKE '%google%' AND SearchPhrase <> '' GROUP BY SearchPhrase ORDER BY c DESC LIMIT 10;
SELECT SearchPhrase, MIN(URL), MIN(Title), COUNT(*) AS c, COUNT(DISTINCT UserID) FROM hits WHERE Title LIKE '%Google%' AND URL NOT LIKE '%.google.%' AND SearchPhrase <> '' GROUP BY SearchPhrase ORDER BY c DESC LIMIT 10;
SELECT * FROM hits WHERE URL LIKE '%google%' ORDER BY EventTime LIMIT 10;
SELECT SearchPhrase FROM hits WHERE SearchPhrase <> '' ORDER BY EventTime LIMIT 10;
SELECT SearchPhrase FROM hits WHERE SearchPhrase <> '' ORDER BY SearchPhrase LIMIT 10;
SELECT SearchPhrase FROM hits WHERE SearchPhrase <> '' ORDER BY EventTime, SearchPhrase LIMIT 10;
SELECT CounterID, AVG(length(URL)) AS l, COUNT(*) AS c FROM hits WHERE URL <> '' GROUP BY CounterID HAVING COUNT(*) > 100000 ORDER BY l DESC LIMIT 25;
SELECT REGEXP_REPLACE(Referer, '^https?://(?:www\.)?([^/]+)/.*$', '\1') AS k, AVG(length(Referer)) AS l, COUNT(*) AS c, MIN(Referer) FROM hits WHERE Referer <> '' GROUP BY k HAVING COUNT(*) > 100000 ORDER BY l DESC LIMIT 25;
SELECT SUM(ResolutionWidth), SUM(ResolutionWidth + 1), SUM(ResolutionWidth + 2), SUM(ResolutionWidth + 3), SUM(ResolutionWidth + 4), SUM(ResolutionWidth + 5), SUM(ResolutionWidth + 6), SUM(ResolutionWidth + 7), SUM(ResolutionWidth + 8), SUM(ResolutionWidth + 9), SUM(ResolutionWidth + 10), SUM(ResolutionWidth + 11), SUM(ResolutionWidth + 12), SUM(ResolutionWidth + 13), SUM(ResolutionWidth + 14), SUM(ResolutionWidth + 15), SUM(ResolutionWidth + 16), SUM(ResolutionWidth + 17), SUM(ResolutionWidth + 18), SUM(ResolutionWidth + 19), SUM(ResolutionWidth + 20), SUM(ResolutionWidth + 21), SUM(ResolutionWidth + 22), SUM(ResolutionWidth + 23), SUM(ResolutionWidth + 24), SUM(ResolutionWidth + 25), SUM(ResolutionWidth + 26), SUM(ResolutionWidth + 27), SUM(ResolutionWidth + 28), SUM(ResolutionWidth + 29), SUM(ResolutionWidth + 30), SUM(ResolutionWidth + 31), SUM(ResolutionWidth + 32), SUM(ResolutionWidth + 33), SUM(ResolutionWidth + 34), SUM(ResolutionWidth + 35), SUM(ResolutionWidth + 36), SUM(ResolutionWidth + 37), SUM(ResolutionWidth + 38), SUM(ResolutionWidth + 39), SUM(ResolutionWidth + 40), SUM(ResolutionWidth + 41), SUM(ResolutionWidth + 42), SUM(ResolutionWidth + 43), SUM(ResolutionWidth + 44), SUM(ResolutionWidth + 45), SUM(ResolutionWidth + 46), SUM(ResolutionWidth + 47), SUM(ResolutionWidth + 48), SUM(ResolutionWidth + 49), SUM(ResolutionWidth + 50), SUM(ResolutionWidth + 51), SUM(ResolutionWidth + 52), SUM(ResolutionWidth + 53), SUM(ResolutionWidth + 54), SUM(ResolutionWidth + 55), SUM(ResolutionWidth + 56), SUM(ResolutionWidth + 57), SUM(ResolutionWidth + 58), SUM(ResolutionWidth + 59), SUM(ResolutionWidth + 60), SUM(ResolutionWidth + 61), SUM(ResolutionWidth + 62), SUM(ResolutionWidth + 63), SUM(ResolutionWidth + 64), SUM(ResolutionWidth + 65), SUM(ResolutionWidth + 66), SUM(ResolutionWidth + 67), SUM(ResolutionWidth + 68), SUM(ResolutionWidth + 69), SUM(ResolutionWidth + 70), SUM(ResolutionWidth + 71), SUM(ResolutionWidth + 72), SUM(ResolutionWidth + 73), SUM(ResolutionWidth + 74), SUM(ResolutionWidth + 75), SUM(ResolutionWidth + 76), SUM(ResolutionWidth + 77), SUM(ResolutionWidth + 78), SUM(ResolutionWidth + 79), SUM(ResolutionWidth + 80), SUM(ResolutionWidth + 81), SUM(ResolutionWidth + 82), SUM(ResolutionWidth + 83), SUM(ResolutionWidth + 84), SUM(ResolutionWidth + 85), SUM(ResolutionWidth + 86), SUM(ResolutionWidth + 87), SUM(ResolutionWidth + 88), SUM(ResolutionWidth + 89) FROM hits;
SELECT SearchEngineID, ClientIP, COUNT(*) AS c, SUM(IsRefresh), AVG(ResolutionWidth) FROM hits WHERE SearchPhrase <> '' GROUP BY SearchEngineID, ClientIP ORDER BY c DESC LIMIT 10;
SELECT WatchID, ClientIP, COUNT(*) AS c, SUM(IsRefresh), AVG(ResolutionWidth) FROM hits WHERE SearchPhrase <> '' GROUP BY WatchID, ClientIP ORDER BY c DESC LIMIT 10;
SELECT WatchID, ClientIP, COUNT(*) AS c, SUM(IsRefresh), AVG(ResolutionWidth) FROM hits GROUP BY WatchID, ClientIP ORDER BY c DESC LIMIT 10;
SELECT URL, COUNT(*) AS c FROM hits GROUP BY URL ORDER BY c DESC LIMIT 10;
SELECT 1, URL, COUNT(*) AS c FROM hits GROUP BY 1, URL ORDER BY c DESC LIMIT 10;
SELECT ClientIP, ClientIP - 1, ClientIP - 2, ClientIP - 3, COUNT(*) AS c FROM hits GROUP BY ClientIP, ClientIP - 1, ClientIP - 2, ClientIP - 3 ORDER BY c DESC LIMIT 10;
SELECT URL, COUNT(*) AS PageViews FROM hits WHERE CounterID = 62 AND EventDate >= '2013-07-01' AND EventDate <= '2013-07-31' AND DontCountHits = 0 AND IsRefresh = 0 AND URL <> '' GROUP BY URL ORDER BY PageViews DESC LIMIT 10;
SELECT Title, COUNT(*) AS PageViews FROM hits WHERE CounterID = 62 AND EventDate >= '2013-07-01' AND EventDate <= '2013-07-31' AND DontCountHits = 0 AND IsRefresh = 0 AND Title <> '' GROUP BY Title ORDER BY PageViews DESC LIMIT 10;
SELECT URL, COUNT(*) AS PageViews FROM hits WHERE CounterID = 62 AND EventDate >= '2013-07-01' AND EventDate <= '2013-07-31' AND IsRefresh = 0 AND IsLink <> 0 AND IsDownload = 0 GROUP BY URL ORDER BY PageViews DESC LIMIT 10 OFFSET 1000;
SELECT TraficSourceID, SearchEngineID, AdvEngineID, CASE WHEN (SearchEngineID = 0 AND AdvEngineID = 0) THEN Referer ELSE '' END AS Src, URL AS Dst, COUNT(*) AS PageViews FROM hits WHERE CounterID = 62 AND EventDate >= '2013-07-01' AND EventDate <= '2013-07-31' AND IsRefresh = 0 GROUP BY TraficSourceID, SearchEngineID, AdvEngineID, Src, Dst ORDER BY PageViews DESC LIMIT 10 OFFSET 1000;
SELECT URLHash, EventDate, COUNT(*) AS PageViews FROM hits WHERE CounterID = 62 AND EventDate >= '2013-07-01' AND EventDate <= '2013-07-31' AND IsRefresh = 0 AND TraficSourceID IN (-1, 6) AND RefererHash = 3594120000172545465 GROUP BY URLHash, EventDate ORDER BY PageViews DESC LIMIT 10 OFFSET 100;
SELECT WindowClientWidth, WindowClientHeight, COUNT(*) AS PageViews FROM hits WHERE CounterID = 62 AND EventDate >= '2013-07-01' AND EventDate <= '2013-07-31' AND IsRefresh = 0 AND DontCountHits = 0 AND URLHash = 2868770270353813622 GROUP BY WindowClientWidth, WindowClientHeight ORDER BY PageViews DESC LIMIT 10 OFFSET 10000;
SELECT DATE_TRUNC('minute', EventTime) AS M, COUNT(*) AS PageViews FROM hits WHERE CounterID = 62 AND EventDate >= '2013-07-14' AND EventDate <= '2013-07-15' AND IsRefresh = 0 AND DontCountHits = 0 GROUP BY DATE_TRUNC('minute', EventTime) ORDER BY DATE_TRUNC('minute', EventTime) LIMIT 10 OFFSET 1000;
14 changes: 14 additions & 0 deletions yugabytedb/run.sh
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#!/bin/bash

TRIES=3

cat queries.sql | while read -r query; do
sync
echo 3 | sudo tee /proc/sys/vm/drop_caches

echo "$query"
(
echo '\timing'
yes "$query" | head -n $TRIES
) | ./yugabyte/bin/ysqlsh -U yugabyte -d test -t | grep 'Time'
done