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Singleton <code>GlobalAppConfig</code> to normal instance

Status: Open.

#21 In DKFZ-ODCF/sophia;

· vinjana opened on Feb 6, 2024

Centralize hard-coded cutoffs

Status: Open.

#20 In DKFZ-ODCF/sophia;

· vinjana opened on Feb 6, 2024

Replace manual number parsing

Status: Open.

#19 In DKFZ-ODCF/sophia;

· vinjana opened on Feb 5, 2024

Concept for "compressed master ref" subset.

Status: Open.

#17 In DKFZ-ODCF/sophia;

· vinjana opened on Jan 30, 2024

Make all constructors side-effect-free

Status: Open.

#16 In DKFZ-ODCF/sophia;

· vinjana opened on Jan 30, 2024

Magic numbers returned by SvEvent::filterMatch/Unknown?

Status: Open.

#15 In DKFZ-ODCF/sophia;

· vinjana opened on Jan 23, 2024

Replace "read-type"-magic numbers (e.g. <code>Alignment::getReadType()</code>) by something useful

Status: Open.

#14 In DKFZ-ODCF/sophia;

· vinjana opened on Jan 23, 2024

What's going on in src/SamSegmentMapper.cpp:226

Status: Open.

#13 In DKFZ-ODCF/sophia;

· vinjana opened on Jan 23, 2024

Centralize number parsing code

Status: Open.

#12 In DKFZ-ODCF/sophia;

· vinjana opened on Jan 23, 2024

Avoid global static configuration

Status: Open.

#11 In DKFZ-ODCF/sophia;

· vinjana opened on Jan 23, 2024

ChrIndex and CompressedMrefIndex not type-checked

Status: Open.

#10 In DKFZ-ODCF/sophia;

· vinjana opened on Jan 23, 2024

Remove [[gnu::unused]] parameters

Status: Open.

#8 In DKFZ-ODCF/sophia;

· vinjana opened on Jan 18, 2024