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Can not update to the newest IMGTHLA database (3.46.0) using HISAT-genotyp

Status: Open.

#86 In DaehwanKimLab/hisat-genotype;

· gwang-cls opened on Mar 27, 2025

Different NA12892 HLA results from tutorial

Status: Open.

#85 In DaehwanKimLab/hisat-genotype;

· Tesson98 opened on Oct 19, 2024

How can we increase the number of alleles that the most number of reads are mapped?

Status: Open.

#84 In DaehwanKimLab/hisat-genotype;

· jayminz opened on May 20, 2024

Hisatgenotype is taking too much of time to run on samples

Status: Open.

#83 In DaehwanKimLab/hisat-genotype;

· likhitha99 opened on May 18, 2024

forgot to build hisat2 executables?

Status: Open.

#82 In DaehwanKimLab/hisat-genotype;

· Januaryyiyue opened on Apr 11, 2024

Hisat-genotype run since more than 24h without writting anything or do anything...

Status: Open.

#81 In DaehwanKimLab/hisat-genotype;

· GKerdivel opened on Mar 13, 2024

How to add Custom VCF Data for HLA Typing with HISAT-genotype

Status: Open.

#80 In DaehwanKimLab/hisat-genotype;

· allen890205 opened on Mar 12, 2024

Unable to download genotype_genome_20180128.tar.gz

Status: Open.

#79 In DaehwanKimLab/hisat-genotype;

· KhooWuiSeng opened on Dec 28, 2023

Error when running tutorials code with --assembly

Status: Open.

#77 In DaehwanKimLab/hisat-genotype;

· Runda-Xu opened on Jun 10, 2023

I have some WES data - GRCh37

Status: Open.

#76 In DaehwanKimLab/hisat-genotype;

· Pharmacogenetecist opened on May 3, 2023

How does hisatgenotype handle duplicate reads?

Status: Open.

#75 In DaehwanKimLab/hisat-genotype;

· yingchen69 opened on Apr 5, 2023

manual installation failed!

Status: Open.

#74 In DaehwanKimLab/hisat-genotype;

· yingchen69 opened on Mar 23, 2023