Search results

<code>src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testCleanCache</code> test is flaky

testing

Status: Open.

#5362 In DataBiosphere/toil;

· adamnovak opened on Jul 25, 2025

<code>toil debug-job --retrieveTaskDirectory=somedir</code> on a WDL job will do a Singularity pull

enhancement

intern

Status: Open.

#5360 In DataBiosphere/toil;

· adamnovak opened on Jul 22, 2025

It's hard to troubleshoot Slurm jobs because the Surm job ID doesn't make it to the log

Status: Open.

#5359 In DataBiosphere/toil;

· adamnovak opened on Jul 21, 2025

<code>src/toil/test/utils/utilsTest.py::TestUtils::testGetStatusFailedCWLWF</code> test is flaky

testing

Status: Open.

#5355 In DataBiosphere/toil;

· adamnovak opened on Jul 15, 2025

<code>src/toil/test/src/jobTest.py::TestJob::testDeadlockDetection</code> test is flaky

testing

Status: Open.

#5354 In DataBiosphere/toil;

· adamnovak opened on Jul 15, 2025

Launch clusters with <code>toil launch-cluster</code> by vague version and not specific commit.

aws

enhancement

Status: Open.

#5339 In DataBiosphere/toil;

· adamnovak opened on Jun 18, 2025

Remove the Toil in-workflow autoscaler

Status: Open.

#5328 In DataBiosphere/toil;

· unito-bot opened on Jun 11, 2025

Stop using system Python environment in the Toil containers

Status: Open.

#5322 In DataBiosphere/toil;

· adamnovak opened on May 28, 2025

Toil not recognizing CWL workflows that come from Dockstore by TRS spec

Status: Open.

#5319 In DataBiosphere/toil;

· adamnovak opened on May 22, 2025

SLURM Shebang Line Issues with slurm.py

Status: Open.

#5318 In DataBiosphere/toil;

· jasongallant opened on May 20, 2025

Toil 8.x prints the output of nvidia-smi to stderr at the beginning of each run

bug

intern

Status: Open.

#5306 In DataBiosphere/toil;

· glennhickey opened on May 7, 2025

Add Globus file access/URL support to Toil

enhancement

intern

Status: Open.

#5300 In DataBiosphere/toil;

· unito-bot opened on Apr 28, 2025