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@Deep-MI

Deep Medical Imaging Lab (PI Reuter)

Repositories of the Reuter DeepMI Lab

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  1. FastSurfer Public

    PyTorch implementation of FastSurferCNN

    Jupyter Notebook 509 130

  2. FatSegNet Public

    Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI

    Python 23 12

  3. fsqc Public

    A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

    Python 63 16

  4. LaPy Public

    Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

    Python 85 14

  5. BrainPrint Public

    A python-only derivative of the original BrainPrint scripts

    Python 12 9

  6. olf-bulb-segmentation Public

    Automated Olfactory Bulb Segmentation Pipeline for T2-Weighted MRI

    Jupyter Notebook 9 2

Repositories

Showing 10 of 20 repositories
  • FastSurfer Public

    PyTorch implementation of FastSurferCNN

    Jupyter Notebook 509 Apache-2.0 130 13 5 Updated May 8, 2025
  • hipsta Public

    HIPSTA - a python package for hippocampal shape and thickness analysis

    Python 5 MIT 1 0 1 Updated May 8, 2025
  • YODA Public

    You Only Denoise once or Average (YODA) - A diffusion-based 2.5D medical image translation model with noise-supression

    Python 1 Apache-2.0 1 0 0 Updated May 6, 2025
  • LIT Public

    FastSurfer Lesion Inpainting Tool (FastSurfer-LIT) for lesion inpainting e.g. for whole brain segmentation and cortical surface reconstruction in the presence of tumor, surgical cavities or other abnormalities

    Python 7 Apache-2.0 2 0 0 Updated Apr 9, 2025
  • Deep-MI.github.io Public

    Deep Medical Imaging Lab Webpage

    TeX 2 MIT 16 0 0 Updated Mar 21, 2025
  • LaPy Public

    Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

    Python 85 MIT 14 3 0 Updated Mar 12, 2025
  • segmentation_labeling Public

    A labeling tool for comparative segmentation labeling

    Python 0 MIT 0 0 0 Updated Feb 3, 2025
  • fslmer Public

    Univariate and mass-univariate linear mixed-effects analysis for FreeSurfer imaging data.

    R 8 1 1 0 Updated Jan 22, 2025
  • VINNA4neonates Public

    Newborn Whole Brain Segmentation with VINNA

    Python 0 Apache-2.0 0 1 0 Updated Jan 9, 2025
  • WhipperSnapPy Public

    Python OpenGL Tool for Screenshots of Surface Overlays

    Python 1 MIT 7 1 0 Updated Nov 18, 2024