Skip to content

Latest commit

 

History

History
17 lines (14 loc) · 1.03 KB

README.md

File metadata and controls

17 lines (14 loc) · 1.03 KB

Corpus Callosum Pipeline

FastSurfer-CC is a deep learning-based pipeline for automated segmentation, analysis, and shape analysis of the corpus callosum in brain MRI scans. Also segments the fornix, localizes the anterior and posterior commissure (AC and PC) and standardizes the orientation of the brain.

The documentation is split into three files, please refer to:

  • Module Overview: Description of the pipeline, and the corpus callosum measures produced.
  • Advanced options: Quality control, custom subdivision and visualization options.
  • Output Files: List of output files and their descriptions.

Quickstart

python3 fastsurfer_cc.py --sd /path/to/fastsurfer/output --sid test-case --verbose

Gives all standard outputs. The corpus callosum morphometry can be found at stats/callosum.CC.midslice.json including 100 thickness measurements and the areas of sub-segments.