Minimum requirements for testing multi-crystal zocalo

What's Changed

• Add pre-commit hooks by @graeme-winter in #4
• MXGDA-3723: Added the MVP implementation of a Zebra by @DominicOram in #1
• MXDGA-3724: Added the MVP for the fast grid scan motion by @DominicOram in #2
• 6: Added pyepics to pipfile by @DominicOram in #7
• MXGDA-3722 Ophyd implementation of an Eiger detector by @bentom08 in #3
• 8: Expand fgs system tests by @DominicOram in #9
• Fixes #18 add wait for meta filewriter to be ready by @bentom08 in #23
• added more comprehensive error message for node error check by @bentom08 in #22
• 25: Correctly set filenames on ODIN to avoid doubly setting them by @DominicOram in #26
• Mxgda 3733: Minimal gridscan plan by @DominicOram in #15
• fix zebra config to work on i03 by @bentom08 in #24
• MXGDA 3762: Created a dummy flask server for basic comms with GDA by @DominicOram in #21
• Mxgda 3764: Run plan from flask server by @DominicOram in #28
• 33: Set a hostname to be externally visible for testing by @DominicOram in #37
• 40: Added code to trigger analysis and associated tests by @DominicOram in #41
• Add ispyb functionality by @bentom08 in #39
• add put for the meta filename back in by @bentom08 in #38
• Add vscode settings to automatically format etc. by @DominicOram in #47
• 55: Run black on codebase to format by @DominicOram in #56
• 50: Fixed passing detector parameters to eiger by @DominicOram in #51
• 65: Put artemis in ISPyB comments by @DominicOram in #70
• Added CI for running unit tests by @DominicOram in #48
• 60 store position table correctly by @bentom08 in #74
• Mxgda 3734: Create nexus file by @DominicOram in #52
• 76: Added lenient codecov by @DominicOram in #89
• 34 grid scan complete fails by @DominicOram in #75
• 80: Fix zocalo parameters by @DominicOram in #81
• 82 write master file by @DominicOram in #86
• 59: Set nexus pixels correctly based on ROI by @DominicOram in #95
• 64: Call zocalo and ISPyB as part of the plan by @DominicOram in #78
• 62: Allow GDA to send filename and prefix separately by @DominicOram in #90
• Updated ophyd to master by @DominicOram in #109
• 30: 3d grid scans by @DominicOram in #104
• 61: Correctly cast data to get in ispyb by @DominicOram in #105
• 98 convert grid positions to motor positions by @DominicOram in #108
• 83: Account for no sample id by @DominicOram in #85
• #117: Created device for backlight and start of snapshot plan by @ndg63276 in #120
• #118: Create device for aperture motors and add to snapshot plan by @ndg63276 in #121
• #136 Add matplotlib to pipfile by @ndg63276 in #137
• #122: Created contributing file by @DominicOram in #123
• 97: Added function to wait for analysis results by @DominicOram in #110
• 99: ispyb requirements for 3D scans by @bentom08 in #103
• 125 get undulator gap by @MattPrit in #139
• Minor addition to contributing file by @MattPrit in #143
• 141 Add test for fast_grid_scan_plan zocalo interactions by @bentom08 in #150
• Store 2 sets of snapshots for 3d scans by @bentom08 in #142
• 126 ophyd get synchrotron mode by @abbiemery in #153
• #116: Change sam_{x,y,z} units to um by @MattPrit in #151
• 140 slit gaps using ophyd by @abbiemery in #156
• 138 create example json by @MattPrit in #148
• Fix pre-commit by @MattPrit in #159
• 102: Added code to handle datasets spread over multiple h5 files by @DominicOram in #106
• 93 atomic nexus updates by @MattPrit in #149
• Upgraded python version by @DominicOram in #160
• (#169) Ensure new instances of FullParameters are copies by @DominicOram in #170
• 124 snapshots ophyd device for oav by @MattPrit in #173
• Startup bash script for deploying, stopping and starting Artemis by @bentom08 in #176
• #179: Index list returned from zocalo by @DominicOram in #180
• (#165) Created a composite device that we can wait on for connection by @DominicOram in #167
• #181: Change setup to package format by @abbiemery in #190
• Edit config files so that the correct coverage reports are produced by @MattPrit in #194
• 49: move to position from analysis by @DominicOram in #112
• Fix build system by @MattPrit in #195
• Updated to latest nexgen API by @DominicOram in #162
• reverse zocalo coordinates and use centre_of_mass rather than max_voxel by @bentom08 in #199
• #94: Add tests for eiger.py by @MattPrit in #192
• 174 merge nexus test fixtures by @MattPrit in #182
• #209: Added simple tests for various devices by @DominicOram in #210
• 128 overlay grid on the oav by @MattPrit in #183
• (#171) Added flake8 options and added to CI by @DominicOram in #172
• Remove use of src in imports by @DominicOram in #214
• 206: Ensure directory from GDA is correct by @DominicOram in #213
• Change Underload to zero in nexus file by @bentom08 in #202
• Use artemis-specific zocalo environment by @rjgildea in #203
• 29 filepath for lookuptable by @abbiemery in #216
• Fix file path error by @abbiemery in #223
• #145: synchrotron simulation for system tests by @abbiemery in #215
• #146: Test that undulator can connect to simulation by @MattPrit in #201
• 27 integrate with graylog by @abbiemery in #218
• #77: Inform ISpyB if scan fails by @MattPrit in #186
• Do Image recognition for both omega rotations in a 3D scan by @bentom08 in #157
• Set correct Odin PVs and wait for filename to propagate to meta writer by @bentom08 in #198
• Correct axes on det dist lookup table and update to latest values by @bentom08 in #196
• 204: Added script to set up dev environment by @DominicOram in #205
• 100: Write 2nd nexus file by @DominicOram in #177
• Fix existing folder check in logging by @abbiemery in #233
• (#267) Fix debug unit test launch (doesn't play nice with cov) by @DominicOram in #268
• Attempt to fix CI by @DominicOram in #269
• (#237) Do not move omega by @DominicOram in #264
• 240 ispyb comment by @dperl-dls in #270
• #239 made sure there wasn't an inversion, wrote a unit test to check … by @evalott100 in #280
• Added string=True and wrote unit test for await_true #236 by @evalott100 in #281
• 114 set no steps to 0 at end of scan by @evalott100 in #297
• Ensured proper test file can be passed into beam converter #255 by @evalott100 in #284
• 225 fix system tests by @evalott100 in #282
• 258 migrate to dls python3 pip skeleton by @evalott100 in #278
• (#238) Move to omega 0 at start of plan by @DominicOram in #271
• 88 fix nonetype errors from dataclasses json by @evalott100 in #279
• 258 fix issues by @dperl-dls in #304
• (#226) Store number of images in ispyb correctly by @DominicOram in #227
• #275: Disable ROI after checking successful data collection by @DominicOram in #289
• (#286) Make wrong filename PVs read only by @DominicOram in #290
• (#235) Implement flyable properly by @DominicOram in #265
• 287: Tidy up the eiger by @DominicOram in #288
• Bump actions/setup-python from 1 to 4 by @dependabot in #306
• 305: Ensure reading PVs as strings when appropriate by @DominicOram in #307
• 164 move ispyb and zocalo to communicator by @dperl-dls in #295
• 87: Automate dev workflows using GH actions by @DominicOram in #321
• 241: Fixes race condition on stale params by @DominicOram in #339
• I03 basic devices by @npat113 in #346
• 344 update nexgen by @dperl-dls in #360
• #231 Adjust results from Zocalo by @dperl-dls in #347
• (#361) updating default python interpreter by @NeilSmithDLS in #362
• #353: Merged smargons into one by @DominicOram in #371
• 315 split fgs communicator by @dperl-dls in #357
• 276 new put error in ispyb by @dperl-dls in #340
• #312 a very basic fake zocalo by @dperl-dls in #336
• 129 opentelemetry tracing by @dperl-dls in #382
• (#296) Added test for getting ispyb data by @DominicOram in #385
• 301 zocalo interaction in handler class by @dperl-dls in #381
• (#395) Move when we start waiting on filewriters by @DominicOram in #404
• 318 oav centring create devices for oav set values at start of operation by @evalott100 in #334
• fix old import in oav centring by @dperl-dls in #412
• 391 ispyb interaction and comment by @dperl-dls in #405
• #298 Behave correctly when no results returned by @evalott100 in #354
• remove unused import by @dperl-dls in #414
• Bump softprops/action-gh-release from 0.1.14 to 0.1.15 by @dependabot in #415
• 408 test nexus file by @dperl-dls in #417
• 413 systematize callbacks by @dperl-dls in #416
• 363: Remove unused CI jobs by @DominicOram in #419
• (#248) Wait for valid scan parameters before starting scan by @DominicOram in #425
• 428 fix end writing to ispyb by @DominicOram in #429
• (#389) run_artemis will now fail if not run as the correct user by @DominicOram in #430
• 386 add slit gaps and smargon motors to s03 by @DominicOram in #431
• Tidy up by @DominicOram in #432
• Fix checking for host/user in run_artemis by @DominicOram in #434
• Update setup.cfg by @dperl-dls in #441
• 442: Redirect stdout by @DominicOram in #444
• Fix initialisation of OAV device and parameter loading by @evalott100 in #423
• 355 move zebra logic to plan by @dperl-dls in #365
• 460 fix finalize by @DominicOram in #461
• 446 improve error logging by @dperl-dls in #447
• 399 redo random order tests by @dperl-dls in #443
• 450 Fix artemis startup script to make sure artemis is running properly when restarted from GDA by @DominicOram in #464
• Move test_plan_system to the correct location by @noemifrisina in #471
• Move OAV centering plan to device_setup_plans by @noemifrisina in #474
• Fix incorrect sample depends_on value by @noemifrisina in #472
• add external interaction classes to init by @dperl-dls in #484
• 439: No diffraction by @DominicOram in #488
• 475 update ispyb comment by @dperl-dls in #477
• 367 experiment registry by @dperl-dls in #384
• 245 log zocalo time in ispyb comment by @dperl-dls in #489
• #451 Creating devices before running plans by @DominicOram in #496
• 438: Reset FGS position counter on start up by @DominicOram in #492
• Zocalo no longer returns reversed coordinates by @rjgildea in #483

New Contributors

• @graeme-winter made their first contribution in #4
• @bentom08 made their first contribution in #3
• @ndg63276 made their first contribution in #120
• @MattPrit made their first contribution in #139
• @abbiemery made their first contribution in #153
• @rjgildea made their first contribution in #203
• @dperl-dls made their first contribution in #270
• @dependabot made their first contribution in #306
• @npat113 made their first contribution in #346
• @NeilSmithDLS made their first contribution in #362
• @noemifrisina made their first contribution in #471

Full Changelog: https://github.com/DiamondLightSource/python-artemis/commits/v1.0.0-rc1