Code CI #90
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| # ********** Please don't edit this file! | |
| # ********** It has been generated automatically by dae_devops version 0.5.3. | |
| # ********** For repository_name soakdb3 | |
| name: Code CI | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| # Run weekly to check latest versions of dependencies | |
| - cron: "0 8 * * WED" | |
| env: | |
| # The target python version, which must match the Dockerfile version | |
| CONTAINER_PYTHON: "3.11" | |
| jobs: | |
| lint: | |
| # pull requests are a duplicate of a branch push if within the same repo. | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.repository | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Install python packages | |
| uses: ./.github/actions/install_requirements | |
| with: | |
| requirements_file: requirements-dev-3.x.txt | |
| install_options: -e .[dev,docs] | |
| - name: Lint | |
| run: tox -e pre-commit,mypy | |
| test: | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.repository | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] # can add windows-latest, macos-latest | |
| python: ["3.10"] | |
| install: ["-e .[dev,docs]"] | |
| # Make one version be non-editable to test both paths of version code | |
| include: | |
| - os: "ubuntu-latest" | |
| python: "3.9" | |
| install: ".[dev,docs]" | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| # https://github.com/pytest-dev/pytest/issues/2042 | |
| PY_IGNORE_IMPORTMISMATCH: "1" | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| # Need this to get version number from last tag | |
| fetch-depth: 0 | |
| - name: Install python packages | |
| uses: ./.github/actions/install_requirements | |
| with: | |
| python_version: ${{ matrix.python }} | |
| requirements_file: requirements-test-${{ matrix.os }}-${{ matrix.python }}.txt | |
| install_options: ${{ matrix.install }} | |
| - name: List dependency tree | |
| run: pipdeptree | |
| # TODO: Make startup of MySQL able to be configured. | |
| - name: Start up the MySQL that comes with Unbuntu | |
| run: sudo /etc/init.d/mysql start | |
| - name: Run tests | |
| run: | | |
| sudo apt install environment-modules | |
| export MODULESHOME=/usr/share/modules | |
| source $MODULESHOME/init/bash | |
| pytest | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| name: ${{ matrix.python }}/${{ matrix.os }} | |
| files: cov.xml | |
| dist: | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.repository | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| # Need this to get version number from last tag | |
| fetch-depth: 0 | |
| - name: Build sdist and wheel | |
| run: | | |
| export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct) && \ | |
| pipx run build | |
| - name: Upload sdist and wheel as artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: dist | |
| path: dist | |
| - name: Check for packaging errors | |
| run: pipx run twine check --strict dist/* | |
| - name: Install python packages | |
| uses: ./.github/actions/install_requirements | |
| with: | |
| python_version: ${{env.CONTAINER_PYTHON}} | |
| requirements_file: requirements.txt | |
| install_options: dist/*.whl | |
| - name: Test module --version works using the installed wheel | |
| # If more than one module in src/ replace with module name to test | |
| run: soakdb3 --version-json | |
| container: | |
| needs: [lint, dist, test] | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| # image names must be all lower case | |
| - name: Generate image repo name | |
| run: echo IMAGE_REPOSITORY=ghcr.io/$(tr '[:upper:]' '[:lower:]' <<< "${{ github.repository }}") >> $GITHUB_ENV | |
| - name: Download wheel and lockfiles | |
| uses: actions/download-artifact@v3 | |
| with: | |
| path: .devcontainer | |
| - name: Log in to GitHub Docker Registry | |
| if: github.event_name != 'pull_request' | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: ${{ env.IMAGE_REPOSITORY }} | |
| tags: | | |
| type=ref,event=tag | |
| type=raw,value=latest | |
| - name: Set up Docker Buildx | |
| id: buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Build runtime image | |
| uses: docker/build-push-action@v3 | |
| with: | |
| build-args: | | |
| PIP_OPTIONS=-r lockfiles/requirements.txt dist/*.whl | |
| push: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags') }} | |
| load: ${{ ! (github.event_name == 'push' && startsWith(github.ref, 'refs/tags')) }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| context: .devcontainer | |
| # If you have a long docker build, uncomment the following to turn on caching | |
| # For short build times this makes it a little slower | |
| #cache-from: type=gha | |
| #cache-to: type=gha,mode=max | |
| - name: Test cli works in runtime image | |
| run: docker run ${{ env.IMAGE_REPOSITORY }} --version | |
| release: | |
| # upload to PyPI and make a release on every tag | |
| needs: [lint, dist, test] | |
| if: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags') }} | |
| runs-on: ubuntu-latest | |
| env: | |
| HAS_PYPI_TOKEN: ${{ secrets.PYPI_TOKEN != '' }} | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| - name: Fixup blank lockfiles | |
| # Github release artifacts can't be blank | |
| run: for f in lockfiles/*; do [ -s $f ] || echo '# No requirements' >> $f; done | |
| - name: Github Release | |
| # We pin to the SHA, not the tag, for security reasons. | |
| # https://docs.github.com/en/actions/learn-github-actions/security-hardening-for-github-actions#using-third-party-actions | |
| uses: softprops/action-gh-release@de2c0eb89ae2a093876385947365aca7b0e5f844 # v0.1.15 | |
| with: | |
| prerelease: ${{ contains(github.ref_name, 'a') || contains(github.ref_name, 'b') || contains(github.ref_name, 'rc') }} | |
| files: | | |
| dist/* | |
| lockfiles/* | |
| generate_release_notes: true | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Publish to PyPI | |
| if: ${{ env.HAS_PYPI_TOKEN }} | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.PYPI_TOKEN }} | |
| # dae_devops_fingerprint adf2b49cc576a9c060e1d3257841b202 |