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Merge pull request #148 from EmilHvitfeldt/RC-1.6.0
Release Candidate 1.6.0
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| Package: paletteer | ||
| Title: Comprehensive Collection of Color Palettes | ||
| Version: 1.5.0.9000 | ||
| Version: 1.6.0.9000 | ||
| Author: See AUTHORS file. | ||
| Maintainer: Emil Hvitfeldt <[email protected]> | ||
| Description: The choices of color palettes in R can be quite | ||
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| ## Release Summary | ||
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| Package have been updated to properly insure that it handled it when noSuggest errors come up. | ||
| New palettes have been added. | ||
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| ## R CMD check results | ||
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| 0 errors | 0 warnings | 0 note | ||
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| ## Reverse dependencies | ||
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| Checked all 11 reverse dependencies. No issues. | ||
| Checked all 14 reverse dependencies. No issues. |
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| # Platform | ||
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| |field |value | | ||
| |:--------|:----------------------------| | ||
| |version |R version 4.1.0 (2021-05-18) | | ||
| |os |macOS Big Sur 11.3.1 | | ||
| |system |x86_64, darwin17.0 | | ||
| |ui |RStudio | | ||
| |language |(EN) | | ||
| |collate |en_US.UTF-8 | | ||
| |ctype |en_US.UTF-8 | | ||
| |tz |America/Los_Angeles | | ||
| |date |2021-07-20 | | ||
| |field |value | | ||
| |:--------|:-----------------------------------| | ||
| |version |R version 4.3.1 (2023-06-16) | | ||
| |os |macOS Sonoma 14.2.1 | | ||
| |system |aarch64, darwin20 | | ||
| |ui |RStudio | | ||
| |language |(EN) | | ||
| |collate |en_US.UTF-8 | | ||
| |ctype |en_US.UTF-8 | | ||
| |tz |America/Los_Angeles | | ||
| |date |2024-01-20 | | ||
| |rstudio |2023.12.0+359 Ocean Storm (desktop) | | ||
| |pandoc |2.17.1.1 @ /opt/homebrew/bin/pandoc | | ||
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| # Dependencies | ||
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| |package |old |new |Δ | | ||
| |:---------|:-----|:----------|:--| | ||
| |paletteer |1.3.0 |1.3.0.9000 |* | | ||
| |package |old |new |Δ | | ||
| |:----------|:------|:----------|:--| | ||
| |paletteer |1.5.0 |1.5.0.9000 |* | | ||
| |cli |3.6.2 |3.6.2 | | | ||
| |fansi |1.0.6 |1.0.6 | | | ||
| |farver |2.1.1 |2.1.1 | | | ||
| |glue |1.7.0 |1.7.0 | | | ||
| |lifecycle |1.0.4 |1.0.4 | | | ||
| |magrittr |2.0.3 |2.0.3 | | | ||
| |pillar |1.9.0 |1.9.0 | | | ||
| |pkgconfig |2.0.3 |2.0.3 | | | ||
| |prismatic |1.1.1 |1.1.1 | | | ||
| |rematch2 |2.1.2 |2.1.2 | | | ||
| |rlang |1.1.3 |1.1.3 | | | ||
| |rstudioapi |0.15.0 |0.15.0 | | | ||
| |tibble |3.2.1 |3.2.1 | | | ||
| |utf8 |1.2.4 |1.2.4 | | | ||
| |vctrs |0.6.5 |0.6.5 | | | ||
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| # Revdeps | ||
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| ## Failed to check (1) | ||
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| |package |version |error |warning |note | | ||
| |:--------|:-------|:-----|:-------|:----| | ||
| |restoptr |1.0.6 |1 | | | | ||
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| ## New problems (2) | ||
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| |package |version |error |warning |note | | ||
| |:-----------|:-------|:------|:-------|:--------| | ||
| |[gt](problems.md#gt)|0.10.1 | | |1 __+1__ | | ||
| |[spatialLIBD](problems.md#spatiallibd)|1.14.1 |__+1__ |1 |1 | | ||
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| ## revdepcheck results | ||
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| We checked 6 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. | ||
| We checked 14 reverse dependencies (13 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. | ||
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| * We saw 0 new problems | ||
| * We failed to check 0 packages | ||
| * We saw 1 new problems | ||
| * We failed to check 1 packages | ||
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| Issues with CRAN packages are summarised below. | ||
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| ### New problems | ||
| (This reports the first line of each new failure) | ||
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| * gt | ||
| checking installed package size ... NOTE | ||
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| ### Failed to check | ||
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| * restoptr (NA) |
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| *Wow, no problems at all. :)* | ||
| # restoptr | ||
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| <details> | ||
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| * Version: 1.0.6 | ||
| * GitHub: https://github.com/dimitri-justeau/restoptr | ||
| * Source code: https://github.com/cran/restoptr | ||
| * Date/Publication: 2023-08-18 08:30:07 UTC | ||
| * Number of recursive dependencies: 86 | ||
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| Run `revdepcheck::revdep_details(, "restoptr")` for more info | ||
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| </details> | ||
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| ## In both | ||
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| * checking whether package ‘restoptr’ can be installed ... ERROR | ||
| ``` | ||
| Installation failed. | ||
| See ‘/Users/emilhvitfeldt/Github/paletteer/revdep/checks.noindex/restoptr/new/restoptr.Rcheck/00install.out’ for details. | ||
| ``` | ||
| ## Installation | ||
| ### Devel | ||
| ``` | ||
| * installing *source* package ‘restoptr’ ... | ||
| ** package ‘restoptr’ successfully unpacked and MD5 sums checked | ||
| ** using staged installation | ||
| ** R | ||
| ** inst | ||
| ** byte-compile and prepare package for lazy loading | ||
| Error: package or namespace load failed for ‘rJava’: | ||
| .onLoad failed in loadNamespace() for 'rJava', details: | ||
| call: dyn.load(jli, FALSE) | ||
| error: unable to load shared object '/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib': | ||
| dlopen(/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib, 0x000A): tried: '/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')), '/System/Volumes/Preboot/Cryptexes/OS/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib' (no such file), '/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')) | ||
| Execution halted | ||
| ERROR: lazy loading failed for package ‘restoptr’ | ||
| * removing ‘/Users/emilhvitfeldt/Github/paletteer/revdep/checks.noindex/restoptr/new/restoptr.Rcheck/restoptr’ | ||
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| ``` | ||
| ### CRAN | ||
| ``` | ||
| * installing *source* package ‘restoptr’ ... | ||
| ** package ‘restoptr’ successfully unpacked and MD5 sums checked | ||
| ** using staged installation | ||
| ** R | ||
| ** inst | ||
| ** byte-compile and prepare package for lazy loading | ||
| Error: package or namespace load failed for ‘rJava’: | ||
| .onLoad failed in loadNamespace() for 'rJava', details: | ||
| call: dyn.load(jli, FALSE) | ||
| error: unable to load shared object '/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib': | ||
| dlopen(/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib, 0x000A): tried: '/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')), '/System/Volumes/Preboot/Cryptexes/OS/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib' (no such file), '/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/jli/libjli.dylib' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')) | ||
| Execution halted | ||
| ERROR: lazy loading failed for package ‘restoptr’ | ||
| * removing ‘/Users/emilhvitfeldt/Github/paletteer/revdep/checks.noindex/restoptr/old/restoptr.Rcheck/restoptr’ | ||
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| ``` |
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| *Wow, no problems at all. :)* | ||
| # gt | ||
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| <details> | ||
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| * Version: 0.10.1 | ||
| * GitHub: https://github.com/rstudio/gt | ||
| * Source code: https://github.com/cran/gt | ||
| * Date/Publication: 2024-01-17 23:50:05 UTC | ||
| * Number of recursive dependencies: 109 | ||
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| Run `revdepcheck::revdep_details(, "gt")` for more info | ||
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| </details> | ||
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| ## Newly broken | ||
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| * checking installed package size ... NOTE | ||
| ``` | ||
| installed size is 5.9Mb | ||
| sub-directories of 1Mb or more: | ||
| R 2.4Mb | ||
| help 1.8Mb | ||
| ``` | ||
| ## In both | ||
| * checking data for non-ASCII characters ... NOTE | ||
| ``` | ||
| Note: found 146 marked UTF-8 strings | ||
| ``` | ||
| # spatialLIBD | ||
| <details> | ||
| * Version: 1.14.1 | ||
| * GitHub: https://github.com/LieberInstitute/spatialLIBD | ||
| * Source code: https://github.com/cran/spatialLIBD | ||
| * Date/Publication: 2023-11-30 | ||
| * Number of recursive dependencies: 223 | ||
| Run `revdepcheck::revdep_details(, "spatialLIBD")` for more info | ||
| </details> | ||
| ## Newly broken | ||
| * checking examples ... ERROR | ||
| ``` | ||
| Running examples in ‘spatialLIBD-Ex.R’ failed | ||
| The error most likely occurred in: | ||
| > ### Name: add_images | ||
| > ### Title: Add non-standard images with the same dimensions as current ones | ||
| > ### Aliases: add_images | ||
| > | ||
| > ### ** Examples | ||
| > | ||
| > if (enough_ram()) { | ||
| ... | ||
| + ## Add an image | ||
| + SpatialExperiment::imgData(add_images( | ||
| + spe, | ||
| + image_id_current = "lowres", | ||
| + image_id = "lowres_aws", | ||
| + image_paths = c("151507" = "https://spatial-dlpfc.s3.us-east-2.amazonaws.com/images/151507_tissue_lowres_image.png") | ||
| + )) | ||
| + } | ||
| Error: table metadata already exists | ||
| Execution halted | ||
| ``` | ||
| ## In both | ||
| * checking whether package ‘spatialLIBD’ can be installed ... WARNING | ||
| ``` | ||
| Found the following significant warnings: | ||
| Warning: package ‘SingleCellExperiment’ was built under R version 4.3.2 | ||
| Warning: package ‘SummarizedExperiment’ was built under R version 4.3.2 | ||
| Warning: package ‘S4Vectors’ was built under R version 4.3.2 | ||
| Warning: package ‘GenomeInfoDb’ was built under R version 4.3.2 | ||
| See ‘/Users/emilhvitfeldt/Github/paletteer/revdep/checks.noindex/spatialLIBD/new/spatialLIBD.Rcheck/00install.out’ for details. | ||
| ``` | ||
| * checking installed package size ... NOTE | ||
| ``` | ||
| installed size is 15.3Mb | ||
| sub-directories of 1Mb or more: | ||
| doc 10.9Mb | ||
| help 3.7Mb | ||
| ``` | ||