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Template GitHub Repository for EpiPandit Lab

Quantitative veterinary epidemiology and disease ecology lab

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Text summarizing your project.

Project Organization


├── LICENSE
├── Makefile           <- Makefile with commands like `make setup` or `make conda-create`
├── README.md          <- The top-level README for developers using this project.
├── data
│   ├── external       <- Data from third-party sources.
│   ├── interim        <- Intermediate data that has been transformed.
│   ├── processed      <- The final, canonical data sets for modeling.
│   └── raw            <- The original, immutable data dump.
├── models             <- Trained and serialized models, model predictions, or model summaries
│
├── notebooks          <- Jupyter notebooks. The naming convention is a date (for ordering),
│                         the creator's initials, and a short `-` delimited description, e.g.
│                         `03132024-pranav-data-exploration`.
│
├── references         <- Data dictionaries, manuals, and all other explanatory materials.
│
├── reports            <- Generated analysis as HTML, PDF, LaTeX, etc.
│   └── figures        <- Generated graphics and figures to be used in reporting
│
├── environment.yml   <- The environment file for reproducing the analysis environment, e.g.
│                         generated with `conda create -f environment.yml`
│
├── src                <- Source code for use in this project.
│   ├── __init__.py    <- Makes src a Python module
│   │
│   ├── data           <- Scripts to process data
│   │
│   ├── models         <- Scripts to train models and then use trained models to make
│   │   │                 predictions
│   │
│   └── visualization  <- Scripts to create exploratory and results-oriented visualizations

Setup Instructions


  1. Clone the repo
  2. Create a virtual environment
  3. Install the requirements
  4. Run the notebooks
git clone
cd EpiPandit_Template
make conda-create
conda activate EpiPandit_Template
make setup
jupyter notebook

Project based on the cookiecutter data science project template.

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