Merge pull request #454 from FAIRmat-NFDI/bump-ruff

bump ruff to >v0.6

.pre-commit-config.yaml

@@ -1,7 +1,7 @@
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.5.5
+    rev: v0.7.0
     hooks:
       # Run the linter.
       - id: ruff

dev-requirements.txt

@@ -1,5 +1,5 @@
 # This file was autogenerated by uv via the following command:
-#    uv pip compile --extra=dev --extra=docs --output-file=dev-requirements.txt pyproject.toml
+#    uv pip compile --universal -p 3.11 --extra=dev --extra=docs --output-file=dev-requirements.txt pyproject.toml
 anytree==2.12.1
     # via pynxtools (pyproject.toml)
 ase==3.23.0
@@ -10,7 +10,7 @@ certifi==2024.8.30
     # via requests
 cfgv==3.4.0
     # via pre-commit
-charset-normalizer==3.3.2
+charset-normalizer==3.4.0
     # via requests
 click==8.1.7
     # via
@@ -21,26 +21,34 @@ click==8.1.7
 click-default-group==1.2.4
     # via pynxtools (pyproject.toml)
 colorama==0.4.6
-    # via mkdocs-material
+    # via
+    #   click
+    #   mkdocs
+    #   mkdocs-material
+    #   pytest
 contourpy==1.3.0
     # via matplotlib
-coverage==7.6.1
+coverage==7.6.4
     # via pytest-cov
 cycler==0.12.1
     # via matplotlib
-distlib==0.3.8
+distlib==0.3.9
     # via virtualenv
-filelock==3.16.0
+filelock==3.16.1
     # via virtualenv
-fonttools==4.53.1
+fonttools==4.54.1
     # via matplotlib
 ghp-import==2.1.0
     # via mkdocs
-h5py==3.11.0
+h5py==3.12.1
     # via pynxtools (pyproject.toml)
-identify==2.6.0
+hjson==3.1.0
+    # via
+    #   mkdocs-macros-plugin
+    #   super-collections
+identify==2.6.1
     # via pre-commit
-idna==3.8
+idna==3.10
     # via requests
 importlib-metadata==8.5.0
     # via pynxtools (pyproject.toml)
@@ -64,7 +72,7 @@ markdown==3.7
     #   pymdown-extensions
 markdown-include==0.8.1
     # via pynxtools (pyproject.toml)
-markupsafe==2.1.5
+markupsafe==3.0.2
     # via
     #   jinja2
     #   mkdocs
@@ -84,15 +92,15 @@ mkdocs-click==0.8.1
     # via pynxtools (pyproject.toml)
 mkdocs-get-deps==0.2.0
     # via mkdocs
-mkdocs-macros-plugin==1.0.5
+mkdocs-macros-plugin==1.3.6
     # via pynxtools (pyproject.toml)
-mkdocs-material==9.5.34
+mkdocs-material==9.5.42
     # via pynxtools (pyproject.toml)
 mkdocs-material-extensions==1.3.1
     # via
     #   pynxtools (pyproject.toml)
     #   mkdocs-material
-mypy==1.11.2
+mypy==1.12.1
     # via pynxtools (pyproject.toml)
 mypy-extensions==1.0.0
     # via mypy
@@ -112,31 +120,34 @@ packaging==24.1
     # via
     #   matplotlib
     #   mkdocs
+    #   mkdocs-macros-plugin
     #   pytest
     #   xarray
 paginate==0.5.7
     # via mkdocs-material
-pandas==2.2.2
+pandas==2.2.3
     # via
     #   pynxtools (pyproject.toml)
     #   xarray
 pathspec==0.12.1
-    # via mkdocs
-pillow==10.4.0
+    # via
+    #   mkdocs
+    #   mkdocs-macros-plugin
+pillow==11.0.0
     # via matplotlib
-platformdirs==4.3.2
+platformdirs==4.3.6
     # via
     #   mkdocs-get-deps
     #   virtualenv
 pluggy==1.5.0
     # via pytest
-pre-commit==3.8.0
+pre-commit==4.0.1
     # via pynxtools (pyproject.toml)
 pygments==2.18.0
     # via mkdocs-material
-pymdown-extensions==10.9
+pymdown-extensions==10.11.2
     # via mkdocs-material
-pyparsing==3.1.4
+pyparsing==3.2.0
     # via matplotlib
 pytest==8.3.3
     # via
@@ -170,7 +181,7 @@ regex==2024.9.11
     # via mkdocs-material
 requests==2.32.3
     # via mkdocs-material
-ruff==0.5.5
+ruff==0.7.0
     # via pynxtools (pyproject.toml)
 scipy==1.14.1
     # via ase
@@ -180,29 +191,33 @@ six==1.16.0
     #   python-dateutil
 structlog==24.4.0
     # via pynxtools (pyproject.toml)
-termcolor==2.4.0
+super-collections==0.5.3
+    # via mkdocs-macros-plugin
+termcolor==2.5.0
     # via mkdocs-macros-plugin
-types-pytz==2024.2.0.20240913
+tomli==2.0.2 ; python_full_version == '3.11'
+    # via coverage
+types-pytz==2024.2.0.20241003
     # via pynxtools (pyproject.toml)
-types-pyyaml==6.0.12.20240808
+types-pyyaml==6.0.12.20240917
     # via pynxtools (pyproject.toml)
-types-requests==2.32.0.20240907
+types-requests==2.32.0.20241016
     # via pynxtools (pyproject.toml)
 typing-extensions==4.12.2
     # via mypy
-tzdata==2024.1
+tzdata==2024.2
     # via pandas
 urllib3==2.2.3
     # via
     #   requests
     #   types-requests
-uv==0.4.9
+uv==0.4.25
     # via pynxtools (pyproject.toml)
-virtualenv==20.26.4
+virtualenv==20.27.0
     # via pre-commit
-watchdog==5.0.2
+watchdog==5.0.3
     # via mkdocs
 xarray==2024.9.0
     # via pynxtools (pyproject.toml)
-zipp==3.20.1
+zipp==3.20.2
     # via importlib-metadata

pyproject.toml

@@ -52,7 +52,7 @@ docs = [
 ]
 dev = [
     "mypy",
-    "ruff==0.5.5",
+    "ruff>=0.6",
     "pytest",
     "pytest-timeout",
     "pytest-cov",