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Fix #8104

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Fix

Fix #8104

Workflow file for this run

.github/workflows/pythonapp.yml at 55422e2
name: Basix CI
# This workflow will install Python dependencies, run tests and lint
# with a single version of Python For more information see:
# https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
on:
push:
branches:
- "**"
tags:
- "v*"
pull_request:
branches:
- main
merge_group:
branches:
- main
workflow_dispatch:
jobs:
lint:
name: Lint code
runs-on: ubuntu-latest
steps:
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.12'
- uses: actions/checkout@v4
- name: Ruff check
run: |
pip install ruff
ruff check .
ruff format --check .
- name: MyPy check
run: |
pip install mypy numpy
pip install git+https://github.com/FEniCS/ufl.git
mypy python/basix
build:
name: Build and test
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-22.04]
python-version: ["3.9", "3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo apt-get update
sudo apt-get install -y doxygen graphviz libopenblas-dev liblapack-dev ninja-build
- name: Install UFL branch
run: pip -v install git+https://github.com/FEniCS/ufl.git
- name: Install Basix
run: pip -v install .[ci]
- name: Run units tests
run: pytest -n auto --durations 20 test/
- name: Run simple CMake integration test
run: |
cd test/test_cmake
cmake -DCMAKE_BUILD_TYPE=Debug -DPython3_EXECUTABLE=python3 -G Ninja -B build-dir -S .
cmake --build build-dir/
build-dir/a.out
- name: Run Python demos
run: pytest demo/python/test.py
- name: Run C++ demos
run: pytest demo/cpp/test.py
- name: Build documentation
run: |
export BASIX_VERSION=`python3 -c "import basix; print(basix.__version__)"`
cd doc/cpp
doxygen
cd ../python
python -m sphinx -W -b html source build/html
rm -rf build/html/.doctrees
- name: Upload C++ documentation artifact
uses: actions/upload-artifact@v4
with:
name: doc-cpp-${{ matrix.python-version }}
path: |
doc/cpp/html
retention-days: 2
if-no-files-found: error
- name: Upload Python documentation artifact
uses: actions/upload-artifact@v4
with:
name: doc-python-${{ matrix.python-version }}
path: |
doc/python/build/html
retention-days: 2
if-no-files-found: error
- name: Build website documentation
run: |
sudo apt-get install -y ruby-bundler ruby-dev
export BASIX_VERSION=`python3 -c "import basix; print(basix.__version__)"`
cd doc/web
python make_html.py
- name: Set version name
if: ${{ github.repository == 'FEniCS/basix' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/') ) && matrix.python-version == '3.11' }}
run: |
echo "VERSION_NAME=${GITHUB_REF#refs/*/}" >> $GITHUB_ENV
- name: Build documentation to upload
if: ${{ github.repository == 'FEniCS/basix' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/') ) && matrix.python-version == '3.11' }}
run: |
export BASIX_VERSION=`python3 -c "import basix; print(basix.__version__)"`
cd doc/web
python make_html.py --url https://docs.fenicsproject.org/basix/${{ env.VERSION_NAME }}
- name: Checkout FEniCS/docs
if: ${{ github.repository == 'FEniCS/basix' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/') ) && matrix.python-version == '3.11' }}
uses: actions/checkout@v4
with:
repository: "FEniCS/docs"
path: "docs"
ssh-key: "${{ secrets.SSH_GITHUB_DOCS_PRIVATE_KEY }}"
- name: Copy documentation into repository
if: ${{ github.repository == 'FEniCS/basix' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/') ) && matrix.python-version == '3.11' }}
run: |
cd docs
git rm -r --ignore-unmatch basix/${{ env.VERSION_NAME }}
mkdir -p basix/${{ env.VERSION_NAME }}
cp -r ../doc/web/html/* basix/${{ env.VERSION_NAME }}
- name: Commit and push documentation to FEniCS/docs
if: ${{ github.repository == 'FEniCS/basix' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/') ) && matrix.python-version == '3.11' }}
run: |
cd docs
git config --global user.email "[email protected]"
git config --global user.name "FEniCS GitHub Actions"
git add --all
git commit --allow-empty -m "Update Basix docs FEniCS/basix@${{ github.sha }}"
git push
isolated-python-build:
name: Build Python using '--no-build-isolation'
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.12'
- name: Install dependencies
run: sudo apt-get install -y libopenblas-dev liblapack-dev ninja-build
- name: Install Python dependencies
run: pip install nanobind scikit-build-core[pyproject]
- name: Install Basix
run: pip install --no-build-isolation .
build-cmake:
name: Build using C++ and Python parts separately and run tests
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.12'
- name: Install dependencies
run: sudo apt-get install -y libopenblas-dev liblapack-dev
- name: Install Basix C++ library
run: |
cd cpp
cmake -DCMAKE_BUILD_TYPE=Release -B build-dir -S . # Use make (not ninja)
cmake --build build-dir
sudo cmake --install build-dir
- name: Install Basix Python wrapper
run: |
cd python
pip install .[test]
- name: Run units tests
run: |
pip install pytest-xdist # in ci extras, but most not needed.
pytest -n auto --durations 20 test/
- name: Run Python demos
run: pytest demo/python/test.py
- name: Run C++ demos
run: pytest demo/cpp/test.py
build-cpp-only:
name: Build C++ only and run demos
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Install dependencies
run: sudo apt-get install -y libopenblas-dev liblapack-dev ninja-build
- name: Install Basix
run: |
cmake -G Ninja -DCMAKE_BUILD_TYPE=Release -B build-dir -S cpp
cmake --build build-dir
sudo cmake --install build-dir
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Run tests
run: |
pip install pytest
pytest demo/cpp/test.py