This software performs the segmentation of blood vessels in MRI-Volumes of mural brains.
A combination of a neuronal net (UNet) and various image processing steps is used.
Install using Windows: cd biss python setup.py build_ext --compiler=msvc install
Install using Linux: pip install ./biss
This work was done within a students' project during the "software project engineering" lecture in the third and fourth semester of the bachelor course of Medical and Bioinformatics at the University of Applied Sciences Upper Austria at the campus Hagenberg. It was carried out in cooperation with the Vienna BioCenter Core Facilities, the department for Austrian BioImaging (CMI), and the Aalen University. This article is also based upon work from the COST Action COMULIS (CA17121), supported by COST (European Cooperation in Science and Technology).
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