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Transfer learning ResNet #395

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merged 10 commits into from
Feb 24, 2023
Merged

Transfer learning ResNet #395

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e8b3919
WIP transfer learning ResNet
jeremiedb Feb 16, 2023
e8fe0c0
quick fixes
jeremiedb Feb 16, 2023
67d3a89
cleanup repo
jeremiedb Feb 16, 2023
233071f
cleanup repo
jeremiedb Feb 16, 2023
6365a0c
cleanup repo
jeremiedb Feb 16, 2023
6f91a7c
change data section title
jeremiedb Feb 17, 2023
befc225
typo
jeremiedb Feb 17, 2023
51e6a09
explicit gradients
jeremiedb Feb 19, 2023
ae9651b
explicit gradients script
jeremiedb Feb 19, 2023
fe41a50
explicit gradients tutorial
jeremiedb Feb 19, 2023
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1 change: 1 addition & 0 deletions tutorials/transfer_learning/.gitignore
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data/
170 changes: 127 additions & 43 deletions tutorials/transfer_learning/Manifest.toml
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Expand Up @@ -2,7 +2,7 @@

julia_version = "1.8.5"
manifest_format = "2.0"
project_hash = "b0ad532d6c3d60bd11582fc3df005951e8cf6f5d"
project_hash = "1b0c9d969899e62a3b07dc1cd1fd4fb3525b10c3"

[[deps.AbstractFFTs]]
deps = ["ChainRulesCore", "LinearAlgebra"]
Expand All @@ -12,9 +12,9 @@ version = "1.2.1"

[[deps.Accessors]]
deps = ["Compat", "CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Requires", "StaticArrays", "Test"]
git-tree-sha1 = "f3d4132fa63a6c62ab19b5765daf87ce2d36076c"
git-tree-sha1 = "b9661b900b50ba475145b311a9a0ef9d2a9c85ea"
uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697"
version = "0.1.25"
version = "0.1.26"

[[deps.Adapt]]
deps = ["LinearAlgebra"]
Expand Down Expand Up @@ -100,6 +100,12 @@ git-tree-sha1 = "6717cb9a3425ebb7b31ca4f832823615d175f64a"
uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
version = "3.13.1"

[[deps.Calculus]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad"
uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9"
version = "0.5.1"

[[deps.CatIndices]]
deps = ["CustomUnitRanges", "OffsetArrays"]
git-tree-sha1 = "a0f80a09780eed9b1d106a1bf62041c2efc995bc"
Expand All @@ -108,9 +114,9 @@ version = "0.2.2"

[[deps.ChainRules]]
deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"]
git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a"
git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b"
uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
version = "1.46.1"
version = "1.47.0"

[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
Expand All @@ -130,6 +136,12 @@ git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5"
uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5"
version = "0.14.3"

[[deps.ColorBlendModes]]
deps = ["ColorTypes", "FixedPointNumbers"]
git-tree-sha1 = "9ec825436862d5ab02ad8f2cde72f2d860151fa6"
uuid = "60508b50-96e1-4007-9d6c-f475c410f16b"
version = "0.2.4"

[[deps.ColorTypes]]
deps = ["FixedPointNumbers", "Random"]
git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4"
Expand All @@ -156,9 +168,9 @@ version = "0.3.0"

[[deps.Compat]]
deps = ["Dates", "LinearAlgebra", "UUIDs"]
git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a"
git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "4.5.0"
version = "4.6.0"

[[deps.CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"]
Expand Down Expand Up @@ -203,6 +215,12 @@ git-tree-sha1 = "e8119c1a33d267e16108be441a287a6981ba1630"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.14.0"

[[deps.DataAugmentation]]
deps = ["ColorBlendModes", "CoordinateTransformations", "Distributions", "ImageCore", "ImageDraw", "ImageTransformations", "IndirectArrays", "Interpolations", "LinearAlgebra", "MosaicViews", "OffsetArrays", "Parameters", "Random", "Rotations", "Setfield", "StaticArrays", "Statistics", "Test"]
git-tree-sha1 = "9073179282095c1ce9590e19525ad864a7b83211"
uuid = "88a5189c-e7ff-4f85-ac6b-e6158070f02e"
version = "0.2.11"

[[deps.DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0"
Expand All @@ -227,6 +245,12 @@ version = "0.1.2"
deps = ["Mmap"]
uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"

[[deps.DensityInterface]]
deps = ["InverseFunctions", "Test"]
git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b"
uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
version = "0.4.0"

[[deps.DiffResults]]
deps = ["StaticArraysCore"]
git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621"
Expand All @@ -249,6 +273,12 @@ version = "0.10.7"
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[deps.Distributions]]
deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"]
git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.80"

[[deps.DocStringExtensions]]
deps = ["LibGit2"]
git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
Expand All @@ -260,6 +290,12 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
version = "1.6.0"

[[deps.DualNumbers]]
deps = ["Calculus", "NaNMath", "SpecialFunctions"]
git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566"
uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74"
version = "0.6.8"

[[deps.ExprTools]]
git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d"
uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
Expand Down Expand Up @@ -350,21 +386,27 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"

[[deps.GPUArrays]]
deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
git-tree-sha1 = "4dfaff044eb2ce11a897fecd85538310e60b91e6"
git-tree-sha1 = "a28f752ffab0ccd6660fc7af5ad1c9ad176f45f7"
uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
version = "8.6.2"
version = "8.6.3"

[[deps.GPUArraysCore]]
deps = ["Adapt"]
git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9"
git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa"
uuid = "46192b85-c4d5-4398-a991-12ede77f4527"
version = "0.1.3"
version = "0.1.4"

[[deps.GPUCompiler]]
deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"]
git-tree-sha1 = "48832a7cacbe56e591a7bef690c78b9d00bcc692"
git-tree-sha1 = "95185985a5d2388c6d0fedb06181ad4ddd40e0cb"
uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
version = "0.17.1"
version = "0.17.2"

[[deps.Ghostscript_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "43ba3d3c82c18d88471cfd2924931658838c9d8f"
uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b"
version = "9.55.0+4"

[[deps.Graphics]]
deps = ["Colors", "LinearAlgebra", "NaNMath"]
Expand All @@ -374,15 +416,21 @@ version = "1.1.2"

[[deps.Graphs]]
deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
git-tree-sha1 = "ba2d094a88b6b287bd25cfa86f301e7693ffae2f"
git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4"
uuid = "86223c79-3864-5bf0-83f7-82e725a168b6"
version = "1.7.4"
version = "1.8.0"

[[deps.HypergeometricFunctions]]
deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions", "Test"]
git-tree-sha1 = "709d864e3ed6e3545230601f94e11ebc65994641"
uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
version = "0.3.11"

[[deps.IRTools]]
deps = ["InteractiveUtils", "MacroTools", "Test"]
git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778"
git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20"
uuid = "7869d1d1-7146-5819-86e3-90919afe41df"
version = "0.4.7"
version = "0.4.8"

[[deps.IfElse]]
git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
Expand Down Expand Up @@ -419,6 +467,12 @@ git-tree-sha1 = "b1798a4a6b9aafb530f8f0c4a7b2eb5501e2f2a3"
uuid = "51556ac3-7006-55f5-8cb3-34580c88182d"
version = "0.2.16"

[[deps.ImageDraw]]
deps = ["Distances", "ImageCore", "LinearAlgebra"]
git-tree-sha1 = "6ed6e945d909f87c3013e391dcd3b2a56e48b331"
uuid = "4381153b-2b60-58ae-a1ba-fd683676385f"
version = "0.2.5"

[[deps.ImageFiltering]]
deps = ["CatIndices", "ComputationalResources", "DataStructures", "FFTViews", "FFTW", "ImageBase", "ImageCore", "LinearAlgebra", "OffsetArrays", "Reexport", "SnoopPrecompile", "SparseArrays", "StaticArrays", "Statistics", "TiledIteration"]
git-tree-sha1 = "f265e53558fbbf23e0d54e4fab7106c0f2a9e576"
Expand All @@ -432,16 +486,16 @@ uuid = "82e4d734-157c-48bb-816b-45c225c6df19"
version = "0.6.6"

[[deps.ImageMagick]]
deps = ["FileIO", "ImageCore", "ImageMagick_jll", "InteractiveUtils"]
git-tree-sha1 = "ca8d917903e7a1126b6583a097c5cb7a0bedeac1"
deps = ["FileIO", "ImageCore", "ImageMagick_jll", "InteractiveUtils", "Libdl", "Pkg", "Random"]
git-tree-sha1 = "5bc1cb62e0c5f1005868358db0692c994c3a13c6"
uuid = "6218d12a-5da1-5696-b52f-db25d2ecc6d1"
version = "1.2.2"
version = "1.2.1"

[[deps.ImageMagick_jll]]
deps = ["JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg", "Zlib_jll", "libpng_jll"]
git-tree-sha1 = "1c0a2295cca535fabaf2029062912591e9b61987"
deps = ["Artifacts", "Ghostscript_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg", "Zlib_jll", "libpng_jll"]
git-tree-sha1 = "124626988534986113cfd876e3093e4a03890f58"
uuid = "c73af94c-d91f-53ed-93a7-00f77d67a9d7"
version = "6.9.10-12+3"
version = "6.9.12+3"

[[deps.ImageMetadata]]
deps = ["AxisArrays", "ImageAxes", "ImageBase", "ImageCore"]
Expand Down Expand Up @@ -523,10 +577,10 @@ deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"

[[deps.Interpolations]]
deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"]
git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15"
deps = ["AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"]
git-tree-sha1 = "b7bc05649af456efc75d178846f47006c2c4c3c7"
uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
version = "0.14.7"
version = "0.13.6"

[[deps.IntervalSets]]
deps = ["Dates", "Random", "Statistics"]
Expand Down Expand Up @@ -569,9 +623,9 @@ version = "1.4.1"

[[deps.JpegTurbo]]
deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"]
git-tree-sha1 = "a77b273f1ddec645d1b7c4fd5fb98c8f90ad10a5"
git-tree-sha1 = "106b6aa272f294ba47e96bd3acbabdc0407b5c60"
uuid = "b835a17e-a41a-41e7-81f0-2f016b05efe0"
version = "0.1.1"
version = "0.1.2"

[[deps.JpegTurbo_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand All @@ -593,9 +647,9 @@ version = "3.0.0+1"

[[deps.LLVM]]
deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
git-tree-sha1 = "b8ae281340f0d3e973aae7b96fb7502b0119b376"
git-tree-sha1 = "df115c31f5c163697eede495918d8e85045c8f04"
uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
version = "4.15.0"
version = "4.16.0"

[[deps.LLVMExtra_jll]]
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"]
Expand Down Expand Up @@ -646,9 +700,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"

[[deps.LogExpFunctions]]
deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b"
git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.3.20"
version = "0.3.21"

[[deps.Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
Expand All @@ -660,9 +714,9 @@ uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
version = "2022.2.0+0"

[[deps.MLStyle]]
git-tree-sha1 = "060ef7956fef2dc06b0e63b294f7dbfbcbdc7ea2"
git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8"
uuid = "d8e11817-5142-5d16-987a-aa16d5891078"
version = "0.4.16"
version = "0.4.17"

[[deps.MLUtils]]
deps = ["ChainRulesCore", "DelimitedFiles", "FLoops", "FoldsThreads", "Random", "ShowCases", "Statistics", "StatsBase", "Transducers"]
Expand Down Expand Up @@ -729,9 +783,9 @@ version = "2022.2.1"

[[deps.NNlib]]
deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"]
git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b"
git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d"
uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd"
version = "0.8.16"
version = "0.8.18"

[[deps.NNlibCUDA]]
deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics"]
Expand All @@ -741,9 +795,9 @@ version = "0.2.6"

[[deps.NaNMath]]
deps = ["OpenLibm_jll"]
git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211"
git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4"
uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "1.0.1"
version = "1.0.2"

[[deps.NameResolution]]
deps = ["PrettyPrint"]
Expand Down Expand Up @@ -812,6 +866,12 @@ git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.4.1"

[[deps.PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec"
uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
version = "0.11.16"

[[deps.PNGFiles]]
deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
git-tree-sha1 = "f809158b27eba0c18c269cf2a2be6ed751d3e81d"
Expand Down Expand Up @@ -874,6 +934,12 @@ git-tree-sha1 = "18e8f4d1426e965c7b532ddd260599e1510d26ce"
uuid = "4b34888f-f399-49d4-9bb3-47ed5cae4e65"
version = "1.0.0"

[[deps.QuadGK]]
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git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
version = "2.8.1"

[[deps.Quaternions]]
deps = ["LinearAlgebra", "Random", "RealDot"]
git-tree-sha1 = "da095158bdc8eaccb7890f9884048555ab771019"
Expand Down Expand Up @@ -934,6 +1000,18 @@ git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7"
uuid = "ae029012-a4dd-5104-9daa-d747884805df"
version = "1.3.0"

[[deps.Rmath]]
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git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b"
uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
version = "0.7.1"

[[deps.Rmath_jll]]
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git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da"
uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
version = "0.4.0+0"

[[deps.Rotations]]
deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays", "Statistics"]
git-tree-sha1 = "9480500060044fd25a1c341da53f34df7443c2f2"
Expand Down Expand Up @@ -1025,9 +1103,9 @@ version = "0.8.3"

[[deps.StaticArrays]]
deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"]
git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1"
git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "1.5.12"
version = "1.5.15"

[[deps.StaticArraysCore]]
git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a"
Expand All @@ -1050,6 +1128,12 @@ git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.33.21"

[[deps.StatsFuns]]
deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932"
uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
version = "1.1.1"

[[deps.StructArrays]]
deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"]
git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71"
Expand Down Expand Up @@ -1146,10 +1230,10 @@ uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.12+3"

[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927"
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.2+0"
version = "1.5.4+0"

[[deps.Zygote]]
deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
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