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@GenomePhone

GenomePhone

GenomePhone

License: MIT Kotlin 1.9 Python 3.11 FastAPI Kubernetes Apache Kafka EdgeDB Terraform

Overview

Variant calling is a process in bioinformatics that identifies differences in a genomic sequence compared to a reference sequence. These differences, or variants, can include single nucleotide polymorphisms (SNPs), insertions, deletions, and others. Variant calling plays a crucial role in understanding the genetic basis of diseases, among other applications.

GenomePhone is a framework for distributed variant calling.

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  1. genomephone-core genomephone-core Public

    GenomePhone's main configuration

  2. genomephone-frontend genomephone-frontend Public

    The frontend for genomephone

    Python

  3. genomephone-worker-varscan genomephone-worker-varscan Public

    VarScan implementation of a genomephone worker

    Kotlin

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