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Add dependencies #82

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bfd3229
Add unresolved dependancies
amaljosea Nov 24, 2023
7ed45d1
Update readme
amaljosea Nov 24, 2023
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3 changes: 2 additions & 1 deletion CoreProcessingPipelineScripts/CNN/Mask_RCNN/environment.yml
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Expand Up @@ -130,5 +130,6 @@ dependencies:
- yaml=0.1.7=had09818_2
- zlib=1.2.11=h7b6447c_3
- zstd=1.3.7=h0b5b093_0
- lxml
- libiconv
prefix: /users/miroslav.polacek/.conda/envs/TreeRingCNN

9 changes: 5 additions & 4 deletions README.md
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Expand Up @@ -43,6 +43,11 @@ Input can be either path to an individual core image or a folder containing imag
```
Output_folder specifies the location where to save results.

```
--weightRing
```
Retrained weights in a form of .h5 file can be passed using this argument.

### Optional
```
--cropUpandDown
Expand All @@ -64,7 +69,3 @@ How many overlapping masks should be considered a good detection. Default is 3
--print_detections=yes
```
Saves images with detected masks and distances in “pngs” subfolder within output folder. Default is no.
```
--weightRing
```
Retrained weights in a form of .h5 file can be passed using this argument.