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Installation With Conda - LibMambaUnsatisfiableError #409

@Ophirkastel

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@Ophirkastel

Hi,

I'm currently trying to install Clair3 on my linux ubuntu laptop using Bioconda, planning to use it for ONT-sequenced bam files I already generated.

I added all 3 required channels to Conda without any issues, but then I tried to create a Conda environment as mentioned in the guide:
conda create -n clair3 -c bioconda clair3 python=3.9.0 -y

But unfortunately, I received this error:
LibMambaUnsatisfiableError: Encountered problems while solving:

  • package clair3-1.1.1-py310h779eee5_0 requires libcurl >=8.13.0,<9.0a0, but none of the providers can be installed

Could not solve for environment specs
The following packages are incompatible
└─ clair3 =* * is not installable because there are no viable options
├─ clair3 [0.1.10|0.1.11|...|1.0.8] would require
│ └─ parallel =20191122 *, which conflicts with any installable versions previously reported;
├─ clair3 [1.0.11|1.1.0] would require
│ └─ whatshap =1.7 *, which requires
│ └─ biopython >=1.73 *, which conflicts with any installable versions previously reported;
└─ clair3 [1.1.1|1.1.2|1.2.0] would require
└─ libcurl [>=8.13.0,<9.0a0 *|>=8.14.1,<9.0a0 *] but there are no viable options
├─ libcurl [8.13.0|8.14.0|8.14.1] would require
│ └─ libnghttp2 >=1.64.0,<2.0a0 * but there are no viable options
│ ├─ libnghttp2 1.64.0 would require
│ │ └─ c-ares >=1.32.3,<2.0a0 *, which conflicts with any installable versions previously reported;
│ └─ libnghttp2 1.67.0 would require
│ └─ c-ares >=1.34.5,<2.0a0 *, which conflicts with any installable versions previously reported;
└─ libcurl [8.14.1|8.15.0] conflicts with any installable versions previously reported.

How can I fix this?

Thanks in advance!

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