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HighlanderLab

Software for the management and improvement of populations using data science, genetics, and breeding

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  1. jbancic_alphasimr_plants jbancic_alphasimr_plants Public

    Plant breeding simulations with AlphaSimR

    HTML 12 8

  2. jbancic_GEIsim jbancic_GEIsim Public

    This repository contains examples of code for simulating genotype by environment interaction

    R 4 1

  3. EUCARPIA2025BiometricsPlantBreeding EUCARPIA2025BiometricsPlantBreeding Public

    This is a repository hosting public information about the EUCARPIA 2025 Biometrics in Plant Breeding in Edinburgh 17-19th September 2025 + Satellite workshop 15-16th September

    4

  4. tree_seq_pipeline tree_seq_pipeline Public

    Pipeline to infer tree sequences with different datasets

    Python 3 7

  5. gmafrafortuna_mtdna_breed gmafrafortuna_mtdna_breed Public

    Accounting for nuclear - and mito-genome in dairy cattle breeding: a simulation study

    R 2

  6. nlubanga_tea_breeding_gs nlubanga_tea_breeding_gs Public archive

    Simulation of tea breeding programmes using genomic selection

    R 2 1

Repositories

Showing 10 of 52 repositories
  • RandPedigreePCA Public Forked from hanbin973/RandPedigreePCA

    Principal Component Analysis of Pedigree Relationship Matrix via Randomized SVD

    HighlanderLab/RandPedigreePCA’s past year of commit activity
    Jupyter Notebook 0 3 0 0 Updated Nov 15, 2024
  • HighlanderLab/AlphaFamImpute’s past year of commit activity
    Python 1 MIT 2 0 0 Updated Nov 15, 2024
  • AlphaImpute2 Public Forked from AlphaGenes/AlphaImpute2

    AlphaImpute2: pedigree- and population-based genotype imputation

    HighlanderLab/AlphaImpute2’s past year of commit activity
    Python 0 MIT 6 0 0 Updated Oct 29, 2024
  • vbrajkovic_cattle_mtdna Public

    Analysis of the effect of mtDNA on dairy cattle performance

    HighlanderLab/vbrajkovic_cattle_mtdna’s past year of commit activity
    R 1 MIT 0 0 0 Updated Oct 28, 2024
  • AlphaSimR Public Forked from gaynorr/AlphaSimR

    R package for breeding program simulations

    HighlanderLab/AlphaSimR’s past year of commit activity
    R 0 19 0 1 Updated Oct 28, 2024
  • EUCARPIA2025BiometricsPlantBreeding Public

    This is a repository hosting public information about the EUCARPIA 2025 Biometrics in Plant Breeding in Edinburgh 17-19th September 2025 + Satellite workshop 15-16th September

    HighlanderLab/EUCARPIA2025BiometricsPlantBreeding’s past year of commit activity
    4 0 0 0 Updated Oct 4, 2024
  • jbancic_alphasimr_plants Public

    Plant breeding simulations with AlphaSimR

    HighlanderLab/jbancic_alphasimr_plants’s past year of commit activity
    HTML 12 8 2 0 Updated Sep 19, 2024
  • SIMplyBee Public

    SIMplyBee R package extends AlphaSimR for simulating honeybee populations and breeding programmes

    HighlanderLab/SIMplyBee’s past year of commit activity
    R 1 6 69 1 Updated Sep 19, 2024
  • HighlanderLab/sheep_ts_demo’s past year of commit activity
    HTML 0 MIT 1 0 0 Updated Sep 9, 2024
  • tree_seq_pipeline Public

    Pipeline to infer tree sequences with different datasets

    HighlanderLab/tree_seq_pipeline’s past year of commit activity
    Python 3 MIT 7 15 1 Updated Jul 26, 2024

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