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AlphaPlantImpute2

Requirements

  • Python 3
  • NumPy
  • Numba

Installation

wget https://github.com/AlphaGenes/AlphaPlantImpute2/raw/main/alphaplantimpute2-1.5.3-py3-none-any.whl
pip install alphaplantimpute2-1.5.3-py3-none-any.whl

User guide

See docs/source/index.rst or alphaplantimpute2.pdf in this repository.

Build instructions

Run the following to build the Python wheel and user guide. You will need an installation of Sphinx and LaTex to build the user guide.

git clone https://github.com/AlphaGenes/AlphaPlantImpute2.git
cd AlphaPlantImpute2
git submodule init
git submodule update
bash build_pipeline.sh
pip install dist/AlphaPlantImpute2*.whl

The wheel can be found in dist/ and the user guide at docs/build/latex/alphaplantimpute2.pdf