Use circstd**2 for variance to ensure consistency across SciPy versio… #69
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name: GH Actions CI | |
on: | |
push: | |
branches: | |
- master | |
pull_request: | |
branches: | |
- master | |
concurrency: | |
group: "${{ github.ref }}-${{ github.head_ref }}-${{ github.workflow }}" | |
cancel-in-progress: true | |
defaults: | |
run: | |
shell: bash -l {0} | |
env: | |
CONDA_DEPS: "'MDAnalysis' MDAnalysisTests numpy 'scipy<1.8' pytest pytest-cov codecov" | |
jobs: | |
tests: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest, macOS-latest] | |
python-version: ["3.8", "3.9", "3.10"] | |
env: | |
CYTHON_TRACE_NOGIL: 1 | |
MPLBACKEND: agg | |
GH_OS: ${{ matrix.os }} | |
steps: | |
- uses: actions/checkout@v2 | |
- name: setup_miniconda | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
auto-update-conda: true | |
channels: conda-forge | |
add-pip-as-python-dependency: true | |
mamba-version: "*" | |
architecture: x64 | |
- name: install_deps | |
run: | | |
mamba install ${{ env.CONDA_DEPS }} | |
- name: check_setup | |
run: | | |
echo ${GH_OS} | |
which python | |
which conda | |
which pip | |
conda info | |
- name: install_mdrg | |
run: | | |
python setup.py develop --no-deps | |
- name: run_tests | |
run: | | |
pytest -v --cov=MDRestraintsGenerator --cov-report=xml MDRestraintsGenerator/tests/ | |
- name: codecov | |
uses: codecov/codecov-action@v1 | |
with: | |
file: coverage.xml | |
fail_ci_if_error: True | |
verbose: True |