2.2.0

All output files named with the same pattern as used by PCAWG production run.

2.1.0

Collect QC metrics, timing metrics and other useful intermediate results.

2.0.4

First release after adopting the new way to build docker image, details here

2.0.3

Removed hardcoded output path /var/spool/cwl

2.0.2-cwl1.0

• update in dockerfile
• documentation in CWL descriptor

2.0.1-cwl1.0

• gosu upgrade and icgc portal data
• runs in 52m with Dockstore.json

2.0.0-cwl1.0

CWL 1.0

1.4

Re-worked the file copy operation for multi-tumor, prepare upload happens only once now.

1.3

Added code to handle multi-tumor in a way that preserves the file nam…

1.2

Changes:

• multitumour support
• multitumour covplot
• delly v0.6.6