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deal with SQLAlchemy breaking change when upgrading from 1.4 to 2.+

dependenciesPull requests that update a dependency filePull requests that update a dependency file

low priority

Status: Open.

Task

#575 In ISA-tools/isa-api;

· proccaserra opened on Apr 1, 2025

cannot install isatools package due to ModuleNotFoundError: No module named 'distutils'

help wanted

Status: Open.

#571 In ISA-tools/isa-api;

· woutervriel opened on Jan 9, 2025

Cannot install isatools package due to PyYAML dependency problem

Status: Open.

#570 In ISA-tools/isa-api;

· elichad opened on Jan 6, 2025

sra_to_isatab_batch_convert from the develop branch does not work

Status: Open.

#568 In ISA-tools/isa-api;

· tbrittoborges opened on Aug 28, 2024

Add new test to catch plink related issue when serializing to TAB

enhancement

Status: Open.

#566 In ISA-tools/isa-api;

· proccaserra opened on Aug 5, 2024

Test deprecation messages

clean-up

Status: Open.

#563 In ISA-tools/isa-api;

· knirirr opened on Jul 12, 2024

ISA configurations & ISA-JSON

discussion required

documentation

enhancement

Status: Open.

#559 In ISA-tools/isa-api;

· proccaserra opened on Apr 29, 2024

Test Data Validation Changes

Status: Open.

#558 In ISA-tools/isa-api;

· ptth222 opened on Mar 29, 2024

implement a guard in material.py

enhancement

Status: Open.

#543 In ISA-tools/isa-api;

· proccaserra opened on Feb 23, 2024

refactoring needed in assay_templates.py to properly handle Ontology Source

enhancement

Status: Open.

#542 In ISA-tools/isa-api;

· proccaserra opened on Feb 23, 2024

rewrite more atomic tests for Process sequence to elucidate counts of events

Status: Open.

#541 In ISA-tools/isa-api;

· proccaserra opened on Feb 23, 2024

Required Fields In Investigation XML Config

Status: Open.

#540 In ISA-tools/isa-api;

· ptth222 opened on Feb 23, 2024