build: support fedora (scionproto#4371)

1 . Update the scripts in tools/ so the necessary packages are installed (in the right order).
2 . Bottleneck references the sqlite lib through a single source file so it's easy to use different implementations of that lib.
3 . Replace mattn_sqlite with modenrc_sqlite to remove dependency on a specific version of glibc (which breaks integration tests).

Also did some minor makefile simplifications: no need to "make go-mod-tidy" and "make go_deps.blz" explicitly. It happens as needed upon "make gazelle".

.bazelrc

@@ -1,5 +1,6 @@
 ### common options for all subcommands (help, query, build, ...)
 common --show_timestamps
+
 # connect to buchgr/bazel-remote cache
 # These flags can unfortunately not be specified for `common`, as they are not accepted by all subcommands (help, version, dump)
 build --remote_cache=grpc://localhost:9092 --experimental_remote_downloader=grpc://localhost:9092
@@ -14,6 +15,10 @@ build --java_runtime_version=remotejdk_11
 # disable legacy_create_init for py_binary, py_test etc. This may eventually become the default.
 build --incompatible_default_to_explicit_init_py
 
+# include one of "--define gotags=sqlite_mattn" or "--define gotags=sqlite_modernc"
+# cannot be in common, because query chokes on it.
+build --define gotags=sqlite_modernc
+
 ### options for test
 test --build_tests_only --print_relative_test_log_paths --test_output=errors
 

.buildkite/pipeline.yml

@@ -31,8 +31,8 @@ steps:
       - echo "--- go_deps.bzl"
       - mkdir -p /tmp/test-artifacts
       - cp go.mod go.sum go_deps.bzl /tmp/test-artifacts/
+      - make go.mod
       - make go_deps.bzl -B
-      - make go-mod-tidy
       - diff -u /tmp/test-artifacts/go.mod go.mod
       - diff -u /tmp/test-artifacts/go.sum go.sum
       - diff -u /tmp/test-artifacts/go_deps.bzl go_deps.bzl

BUILD.bazel

@@ -17,7 +17,81 @@ load("@cgrindel_bazel_starlib//updatesrc:defs.bzl", "updatesrc_update_all")
 # gazelle:exclude doc/**
 # gazelle:exclude rules_openapi/tools/node_modules/**
 # gazelle:exclude tools/lint/**/testdata/src/**
-gazelle(name = "gazelle")
+
+# We suport two sqlite implementations: modernc and mattn. Each implementation
+# has a corresponding sqlite_<impl>.go "driver" in private/storage/db. Which
+# driver gets compiled and linked is controled by a go build tag: sqlite_mattn
+# or sqlite_modernc. Those are specified on the command line
+# with "--define gotags=sqlite_mattn" or "--define gotags=sqlite_modernc"
+# (see the build options in .bazelrc).
+#
+# Unfortunately Gazelle needs to be given these tags explicitly via the builtags
+# attribute. So, to ensure consistency we have to translate our two gotags into
+# build_tags. To that end, we create two config_setting flags that are
+# set in response to matching the gotags value and use them to select the relevant
+# tag for gazelle. (The "define_value" attribute of config_setting doesn't define
+# anything. It matches a key-value pair from "--define").
+#
+# This is simplistic but the complete, by-the-everchanging-bazel-book, solution
+# is ludicrously complicated. Go there if and when needed.
+config_setting(
+    name = "sqlite_mattn",
+    define_values = {
+        "gotags": "sqlite_mattn",
+    },
+)
+
+config_setting(
+    name = "sqlite_modernc",
+    define_values = {
+        "gotags": "sqlite_modernc",
+    },
+)
+
+# This is a dummy target so Make can "blaze build --announce_rc <something>
+# Where something truly does nothing that we may care about.
+
+config_setting(
+    name = "dummy_setting",
+    define_values = {
+        "whatever": "whatever",
+    },
+)
+
+gazelle(
+    name = "gazelle",
+    build_tags = select({
+        ":sqlite_modernc": ["sqlite_modernc"],
+        ":sqlite_mattn": ["sqlite_mattn"],
+    }),
+    command = "update",
+    extra_args = [
+        "-mode",
+        "fix",
+        "-go_naming_convention",
+        "go_default_library",
+    ],
+)
+
+gazelle(
+    name = "gazelle_diff",
+    build_tags = select({
+        ":sqlite_modernc": ["sqlite_modernc"],
+        ":sqlite_mattn": ["sqlite_mattn"],
+    }),
+    command = "update",
+    extra_args = [
+        "-mode",
+        "diff",
+        "-go_naming_convention",
+        "go_default_library",
+    ],
+)
+
+gazelle(
+    name = "gazelle_update_repos",
+    command = "update-repos",
+)
 
 go_lint_config(
     name = "go_lint_config",

Makefile

@@ -1,6 +1,4 @@
-.PHONY: all antlr bazel clean docker-images gazelle go-mod-tidy licenses mocks protobuf scion-topo test test-integration write_all_source_files
-GAZELLE_MODE?=fix
-GAZELLE_DIRS=.
+.PHONY: all antlr bazel clean docker-images gazelle go.mod licenses mocks protobuf scion-topo test test-integration write_all_source_files
 
 build: bazel
 
@@ -10,7 +8,7 @@ build: bazel
 # Use NOTPARALLEL to force correct order.
 # Note: From GNU make 4.4, this still allows building any other targets (e.g. lint) in parallel.
 .NOTPARALLEL: all
-all: go_deps.bzl protobuf mocks gazelle licenses build antlr write_all_source_files
+all: go_deps.bzl protobuf mocks gazelle build antlr write_all_source_files licenses
 
 clean:
 	bazel clean
@@ -28,12 +26,17 @@ test:
 test-integration:
 	bazel test --config=integration_all
 
-go-mod-tidy:
+go.mod:
 	bazel run --config=quiet @go_sdk//:bin/go -- mod tidy
 
 go_deps.bzl: go.mod
+<<<<<<< HEAD
 	@# gazelle is run with "-args"; so our arguments are added to those from the gazelle() rule.
 	bazel run --config=quiet //:gazelle -- update-repos -prune -from_file=go.mod -to_macro=go_deps.bzl%go_deps
+=======
+	@# gazelle is run with "-args"; so our arguments are added to those from the gazelle() rule. 
+	bazel run --verbose_failures --config=quiet //:gazelle_update_repos -- -args -prune -from_file=go.mod -to_macro=go_deps.bzl%go_deps
+>>>>>>> 4096d879b (build: support fedora (#4371))
 	@# XXX(matzf): clean up; gazelle update-repose inconsistently inserts blank lines (see bazelbuild/bazel-gazelle#1088).
 	@sed -e '/def go_deps/,$${/^$$/d}' -i go_deps.bzl
 
@@ -58,14 +61,14 @@ protobuf:
 mocks:
 	tools/gomocks.py
 
-gazelle:
-	bazel run //:gazelle --config=quiet -- update -mode=$(GAZELLE_MODE) -go_naming_convention go_default_library $(GAZELLE_DIRS)
+gazelle: go_deps.bzl
+	bazel run //:gazelle --verbose_failures --config=quiet
 
 licenses:
 	tools/licenses.sh
 
 antlr:
-	antlr/generate.sh $(GAZELLE_MODE)
+	antlr/generate.sh fix
 
 write_all_source_files:
 	bazel run //:write_all_source_files
@@ -84,16 +87,18 @@ lint-go: lint-go-gazelle lint-go-bazel lint-go-golangci lint-go-semgrep
 
 lint-go-gazelle:
 	$(info ==> $@)
-	@$(MAKE) -s gazelle GAZELLE_MODE=diff
+	bazel run //:gazelle_diff --verbose_failures --config=quiet
 
 lint-go-bazel:
 	$(info ==> $@)
 	@tools/quiet bazel test --config lint
 
+GO_BUILD_TAGS_ARG=$(shell bazel build --ui_event_filters=-stdout,-stderr --announce_rc --noshow_progress :dummy_setting 2>&1 | grep "'build' options" | sed -n "s/^.*--define gotags=\(\S*\).*/--build-tags \1/p" )
+
 lint-go-golangci:
 	$(info ==> $@)
 	@if [ -t 1 ]; then tty=true; else tty=false; fi; \
-		tools/quiet docker run --tty=$$tty --rm -v golangci-lint-modcache:/go -v golangci-lint-buildcache:/root/.cache -v "${PWD}:/src" -w /src golangci/golangci-lint:v1.54.2 golangci-lint run --config=/src/.golangcilint.yml --timeout=3m --skip-dirs doc ./...
+		tools/quiet docker run --tty=$$tty --rm -v golangci-lint-modcache:/go -v golangci-lint-buildcache:/root/.cache -v "${PWD}:/src" -w /src golangci/golangci-lint:v1.50.0 golangci-lint run --config=/src/.golangcilint.yml --timeout=3m $(GO_BUILD_TAGS_ARG) --skip-dirs doc ./...
 
 lint-go-semgrep:
 	$(info ==> $@)

doc/dev/dependencies.rst

@@ -22,10 +22,9 @@ Workflow to modify dependencies
 To add/remove or update dependencies:
 
 1. Modify ``go.mod``, manually or using e.g. ``go get``.
-2. ``make go-mod-tidy``
-3. ``make go_deps.bzl``
-4. ``make licenses``, to update the licenses with the new dependency
-5. ``make gazelle``, to update the build files that depend on the newly added dependency
+2. ``make go_deps.bzl``
+3. ``make licenses``, to update the licenses with the new dependency
+4. ``make gazelle``, to update the build files that depend on the newly added dependency
 
 .. Warning::
   The Go rules for Bazel (rules_go) declares some internally used dependencies.

doc/dev/setup.rst

@@ -9,9 +9,9 @@ Prerequisites
 #. Make sure that you are using a clean and recently updated linux distribution. Distributions that are
    known to work are:
 
-   * **Ubuntu** release 18.04 or later.
-   * **Fedora** release 38 or later.
-   * **Amazon** Linux 2.
+   - **Ubuntu** release 18.04 or later.
+   - **Fedora** release 38 or later.
+   - **Amazon** Linux 2.
 
    Other Linux environments will usually be fine too, but some of the tooling might need
    tweaking. If you make things work for other distributions, please update this list.
@@ -109,11 +109,22 @@ rejecting your changes.
 #. Install go. Either follow `the official instructions <https://go.dev/doc/install>`_
    or check the `Ubuntu specific installation options on the golang wiki <https://github.com/golang/go/wiki/Ubuntu>`_.
 
+#. Decide which implementation of sqlite you want to use:
+
+   - `mattn`: A cgo implementation. It is well established but makes go
+     executables dependent on a minimum glibc version.
+   - `modernc`: A pure go implementation. It does not cause glibc version
+     issues but is less common. modernc is currently recommended due to
+     the glibc issue.
+
 #. Build SCION services and tools.
 
    .. code-block:: bash
 
-      go build -o bin ./<service>/cmd/<service>...
+      go build -o -tags sqlite_<impl> bin ./<service>/cmd/<service>...
+
+   where <impl> is one of `modernc` or `mattn`.
+
 
 Tips and Tricks
 ---------------

go.mod

@@ -22,7 +22,7 @@ require (
 	github.com/iancoleman/strcase v0.2.0
 	github.com/lestrrat-go/jwx v1.2.25
 	github.com/mattn/go-isatty v0.0.17
-	github.com/mattn/go-sqlite3 v1.14.16
+	github.com/mattn/go-sqlite3 v1.14.17
 	github.com/olekukonko/tablewriter v0.0.5
 	github.com/opentracing/opentracing-go v1.2.0
 	github.com/patrickmn/go-cache v2.1.1-0.20180815053127-5633e0862627+incompatible
@@ -51,6 +51,7 @@ require (
 	// Necessary so @org_golang_google_genproto is included in the go_deps.bzl.
 	google.golang.org/protobuf v1.31.0
 	gopkg.in/yaml.v2 v2.4.0
+	modernc.org/sqlite v1.24.0
 )
 
 require (
@@ -63,6 +64,7 @@ require (
 	github.com/cpuguy83/go-md2man/v2 v2.0.2 // indirect
 	github.com/davecgh/go-spew v1.1.1 // indirect
 	github.com/decred/dcrd/dcrec/secp256k1/v4 v4.0.1 // indirect
+	github.com/dustin/go-humanize v1.0.1 // indirect
 	github.com/fsnotify/fsnotify v1.6.0 // indirect
 	github.com/go-openapi/jsonpointer v0.19.5 // indirect
 	github.com/go-openapi/swag v0.21.1 // indirect
@@ -77,6 +79,7 @@ require (
 	github.com/invopop/yaml v0.1.0 // indirect
 	github.com/josharian/intern v1.0.0 // indirect
 	github.com/jtolds/gls v4.20.0+incompatible // indirect
+	github.com/kballard/go-shellquote v0.0.0-20180428030007-95032a82bc51 // indirect
 	github.com/lestrrat-go/backoff/v2 v2.0.8 // indirect
 	github.com/lestrrat-go/blackmagic v1.0.0 // indirect
 	github.com/lestrrat-go/httpcc v1.0.1 // indirect
@@ -97,6 +100,7 @@ require (
 	github.com/prometheus/common v0.37.0 // indirect
 	github.com/prometheus/procfs v0.8.0 // indirect
 	github.com/quic-go/qtls-go1-20 v0.3.3 // indirect
+	github.com/remyoudompheng/bigfft v0.0.0-20230129092748-24d4a6f8daec // indirect
 	github.com/russross/blackfriday/v2 v2.1.0 // indirect
 	github.com/smartystreets/assertions v1.2.0 // indirect
 	github.com/spf13/afero v1.9.3 // indirect
@@ -114,6 +118,15 @@ require (
 	google.golang.org/genproto/googleapis/rpc v0.0.0-20230815205213-6bfd019c3878 // indirect
 	gopkg.in/ini.v1 v1.67.0 // indirect
 	gopkg.in/yaml.v3 v3.0.1 // indirect
+	lukechampine.com/uint128 v1.2.0 // indirect
+	modernc.org/cc/v3 v3.40.0 // indirect
+	modernc.org/ccgo/v3 v3.16.13 // indirect
+	modernc.org/libc v1.22.5 // indirect
+	modernc.org/mathutil v1.5.0 // indirect
+	modernc.org/memory v1.5.0 // indirect
+	modernc.org/opt v0.1.3 // indirect
+	modernc.org/strutil v1.1.3 // indirect
+	modernc.org/token v1.0.1 // indirect
 )
 
 go 1.18

go.sum

@@ -95,6 +95,8 @@ github.com/docker/cli v20.10.20+incompatible h1:lWQbHSHUFs7KraSN2jOJK7zbMS2jNCHI
 github.com/docker/distribution v2.8.1+incompatible h1:Q50tZOPR6T/hjNsyc9g8/syEs6bk8XXApsHjKukMl68=
 github.com/docker/docker v20.10.20+incompatible h1:kH9tx6XO+359d+iAkumyKDc5Q1kOwPuAUaeri48nD6E=
 github.com/docker/docker-credential-helpers v0.7.0 h1:xtCHsjxogADNZcdv1pKUHXryefjlVRqWqIhk/uXJp0A=
+github.com/dustin/go-humanize v1.0.1 h1:GzkhY7T5VNhEkwH0PVJgjz+fX1rhBrR7pRT3mDkpeCY=
+github.com/dustin/go-humanize v1.0.1/go.mod h1:Mu1zIs6XwVuF/gI1OepvI0qD18qycQx+mFykh5fBlto=
 github.com/envoyproxy/go-control-plane v0.9.0/go.mod h1:YTl/9mNaCwkRvm6d1a2C3ymFceY/DCBVvsKhRF0iEA4=
 github.com/envoyproxy/go-control-plane v0.9.1-0.20191026205805-5f8ba28d4473/go.mod h1:YTl/9mNaCwkRvm6d1a2C3ymFceY/DCBVvsKhRF0iEA4=
 github.com/envoyproxy/go-control-plane v0.9.4/go.mod h1:6rpuAdCZL397s3pYoYcLgu1mIlRU8Am5FuJP05cCM98=
@@ -206,7 +208,10 @@ github.com/google/pprof v0.0.0-20201023163331-3e6fc7fc9c4c/go.mod h1:kpwsk12EmLe
 github.com/google/pprof v0.0.0-20201203190320-1bf35d6f28c2/go.mod h1:kpwsk12EmLew5upagYY7GY0pfYCcupk39gWOCRROcvE=
 github.com/google/pprof v0.0.0-20201218002935-b9804c9f04c2/go.mod h1:kpwsk12EmLew5upagYY7GY0pfYCcupk39gWOCRROcvE=
 github.com/google/pprof v0.0.0-20221118152302-e6195bd50e26 h1:Xim43kblpZXfIBQsbuBVKCudVG457BR2GZFIz3uw3hQ=
+<<<<<<< HEAD
 github.com/google/pprof v0.0.0-20221118152302-e6195bd50e26/go.mod h1:dDKJzRmX4S37WGHujM7tX//fmj1uioxKzKxz3lo4HJo=
+=======
+>>>>>>> 4096d879b (build: support fedora (#4371))
 github.com/google/renameio v0.1.0/go.mod h1:KWCgfxg9yswjAJkECMjeO8J8rahYeXnNhOm40UhjYkI=
 github.com/google/uuid v1.1.2/go.mod h1:TIyPZe4MgqvfeYDBFedMoGGpEw/LqOeaOT+nhxU+yHo=
 github.com/google/uuid v1.3.0 h1:t6JiXgmwXMjEs8VusXIJk2BXHsn+wx8BZdTaoZ5fu7I=
@@ -251,6 +256,8 @@ github.com/jtolds/gls v4.20.0+incompatible/go.mod h1:QJZ7F/aHp+rZTRtaJ1ow/lLfFfV
 github.com/juju/gnuflag v0.0.0-20171113085948-2ce1bb71843d/go.mod h1:2PavIy+JPciBPrBUjwbNvtwB6RQlve+hkpll6QSNmOE=
 github.com/julienschmidt/httprouter v1.2.0/go.mod h1:SYymIcj16QtmaHHD7aYtjjsJG7VTCxuUUipMqKk8s4w=
 github.com/julienschmidt/httprouter v1.3.0/go.mod h1:JR6WtHb+2LUe8TCKY3cZOxFyyO8IZAc4RVcycCCAKdM=
+github.com/kballard/go-shellquote v0.0.0-20180428030007-95032a82bc51 h1:Z9n2FFNUXsshfwJMBgNA0RU6/i7WVaAegv3PtuIHPMs=
+github.com/kballard/go-shellquote v0.0.0-20180428030007-95032a82bc51/go.mod h1:CzGEWj7cYgsdH8dAjBGEr58BoE7ScuLd+fwFZ44+/x8=
 github.com/kisielk/errcheck v1.5.0/go.mod h1:pFxgyoBC7bSaBwPgfKdkLd5X25qrDl4LWUI2bnpBCr8=
 github.com/kisielk/gotool v1.0.0/go.mod h1:XhKaO+MFFWcvkIS/tQcRk01m1F5IRFswLeQ+oQHNcck=
 github.com/klauspost/compress v1.15.11 h1:Lcadnb3RKGin4FYM/orgq0qde+nc15E5Cbqg4B9Sx9c=
@@ -290,8 +297,8 @@ github.com/mattn/go-isatty v0.0.17 h1:BTarxUcIeDqL27Mc+vyvdWYSL28zpIhv3RoTdsLMPn
 github.com/mattn/go-isatty v0.0.17/go.mod h1:kYGgaQfpe5nmfYZH+SKPsOc2e4SrIfOl2e/yFXSvRLM=
 github.com/mattn/go-runewidth v0.0.9 h1:Lm995f3rfxdpd6TSmuVCHVb/QhupuXlYr8sCI/QdE+0=
 github.com/mattn/go-runewidth v0.0.9/go.mod h1:H031xJmbD/WCDINGzjvQ9THkh0rPKHF+m2gUSrubnMI=
-github.com/mattn/go-sqlite3 v1.14.16 h1:yOQRA0RpS5PFz/oikGwBEqvAWhWg5ufRz4ETLjwpU1Y=
-github.com/mattn/go-sqlite3 v1.14.16/go.mod h1:2eHXhiwb8IkHr+BDWZGa96P6+rkvnG63S2DGjv9HUNg=
+github.com/mattn/go-sqlite3 v1.14.17 h1:mCRHCLDUBXgpKAqIKsaAaAsrAlbkeomtRFKXh2L6YIM=
+github.com/mattn/go-sqlite3 v1.14.17/go.mod h1:2eHXhiwb8IkHr+BDWZGa96P6+rkvnG63S2DGjv9HUNg=
 github.com/matttproud/golang_protobuf_extensions v1.0.1 h1:4hp9jkHxhMHkqkrB3Ix0jegS5sx/RkqARlsWZ6pIwiU=
 github.com/matttproud/golang_protobuf_extensions v1.0.1/go.mod h1:D8He9yQNgCq6Z5Ld7szi9bcBfOoFv/3dc6xSMkL2PC0=
 github.com/mitchellh/go-homedir v1.1.0 h1:lukF9ziXFxDFPkA1vsr5zpc1XuPDn/wFntq5mG+4E0Y=
@@ -362,6 +369,9 @@ github.com/quic-go/qtls-go1-20 v0.3.3 h1:17/glZSLI9P9fDAeyCHBFSWSqJcwx1byhLwP5eU
 github.com/quic-go/qtls-go1-20 v0.3.3/go.mod h1:X9Nh97ZL80Z+bX/gUXMbipO6OxdiDi58b/fMC9mAL+k=
 github.com/quic-go/quic-go v0.38.1 h1:M36YWA5dEhEeT+slOu/SwMEucbYd0YFidxG3KlGPZaE=
 github.com/quic-go/quic-go v0.38.1/go.mod h1:ijnZM7JsFIkp4cRyjxJNIzdSfCLmUMg9wdyhGmg+SN4=
+github.com/remyoudompheng/bigfft v0.0.0-20200410134404-eec4a21b6bb0/go.mod h1:qqbHyh8v60DhA7CoWK5oRCqLrMHRGoxYCSS9EjAz6Eo=
+github.com/remyoudompheng/bigfft v0.0.0-20230129092748-24d4a6f8daec h1:W09IVJc94icq4NjY3clb7Lk8O1qJ8BdBEF8z0ibU0rE=
+github.com/remyoudompheng/bigfft v0.0.0-20230129092748-24d4a6f8daec/go.mod h1:qqbHyh8v60DhA7CoWK5oRCqLrMHRGoxYCSS9EjAz6Eo=
 github.com/rogpeppe/go-internal v1.3.0/go.mod h1:M8bDsm7K2OlrFYOpmOWEs/qY81heoFRclV5y23lUDJ4=
 github.com/rogpeppe/go-internal v1.6.1 h1:/FiVV8dS/e+YqF2JvO3yXRFbBLTIuSDkuC7aBOAvL+k=
 github.com/russross/blackfriday/v2 v2.1.0 h1:JIOH55/0cWyOuilr9/qlrm0BSXldqnqwMsf35Ld67mk=
@@ -812,6 +822,30 @@ honnef.co/go/tools v0.0.0-20190523083050-ea95bdfd59fc/go.mod h1:rf3lG4BRIbNafJWh
 honnef.co/go/tools v0.0.1-2019.2.3/go.mod h1:a3bituU0lyd329TUQxRnasdCoJDkEUEAqEt0JzvZhAg=
 honnef.co/go/tools v0.0.1-2020.1.3/go.mod h1:X/FiERA/W4tHapMX5mGpAtMSVEeEUOyHaw9vFzvIQ3k=
 honnef.co/go/tools v0.0.1-2020.1.4/go.mod h1:X/FiERA/W4tHapMX5mGpAtMSVEeEUOyHaw9vFzvIQ3k=
+lukechampine.com/uint128 v1.2.0 h1:mBi/5l91vocEN8otkC5bDLhi2KdCticRiwbdB0O+rjI=
+lukechampine.com/uint128 v1.2.0/go.mod h1:c4eWIwlEGaxC/+H1VguhU4PHXNWDCDMUlWdIWl2j1gk=
+modernc.org/cc/v3 v3.40.0 h1:P3g79IUS/93SYhtoeaHW+kRCIrYaxJ27MFPv+7kaTOw=
+modernc.org/cc/v3 v3.40.0/go.mod h1:/bTg4dnWkSXowUO6ssQKnOV0yMVxDYNIsIrzqTFDGH0=
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