annotate collapsed cells with 'echo=false'

src/config.jl

@@ -6,6 +6,7 @@ const defaultParams =
                                 :doc_number => 0,
                                 :chunk_defaults =>
                                 Dict{Symbol,Any}(
+                                :suppress_output=> false,
                                 :echo=> true,
                                 :results=> "markup",
                                 :hold => false,

src/readers.jl

@@ -102,14 +102,16 @@ function parse_doc(document::AbstractString, format::MarkupInput)
       if m.captures[1] == nothing
           optionString = ""
       else
-          optionString=strip(m.captures[1])
+          optionString= m.captures[1]
       end
 
       options = Dict{Symbol,Any}()
-      if length(optionString) > 0
-          expr = Meta.parse(optionString)
-          Base.Meta.isexpr(expr,:(=)) && (options[expr.args[1]] = expr.args[2])
-          Base.Meta.isexpr(expr,:toplevel) && map(pushopt,fill(options,length(expr.args)),expr.args)
+      if !isempty(optionString)
+          map(strip.(split(optionString, ','))) do opt
+            expr = Meta.parse(opt)
+            Base.Meta.isexpr(expr,:(=)) && (options[expr.args[1]] = expr.args[2])
+            Base.Meta.isexpr(expr,:toplevel) && map(pushopt,fill(options,length(expr.args)),expr.args)
+          end
       end
       haskey(options, :label) && (options[:name] = options[:label])
       haskey(options, :name) || (options[:name] = nothing)
@@ -260,15 +262,27 @@ function parse_doc(document::String, format::NotebookInput)
   document = replace(document, "\r\n" => "\n")
   nb = JSON.parse(document)
   parsed = Any[]
-  options = Dict{Symbol,Any}()
   opt_string = ""
   docno = 1
   codeno = 1
 
   for cell in nb["cells"]
     srctext = "\n" * join(cell["source"], "")
+    options = Dict{Symbol,Any}()
 
     if cell["cell_type"] == "code"
+      opt_strings = String[]
+      if haskey(cell["metadata"], "jupyter")
+          if get(cell["metadata"]["jupyter"], "source_hidden", false)
+              push!(opt_strings, "echo = false")
+              options[:echo] = false
+          end
+          if get(cell["metadata"]["jupyter"], "outputs_hidden", false)
+              push!(opt_strings, "suppress_output = true")
+              options[:suppress_output] = true
+          end
+      end
+      opt_string = join(opt_strings, ", ")
       chunk = CodeChunk(rstrip(srctext), codeno, 0, opt_string, options)
       push!(parsed, chunk)
       codeno += 1
@@ -278,8 +292,7 @@ function parse_doc(document::String, format::NotebookInput)
       docno +=1
     end
   end
-
-return parsed
+  return parsed
 end
 
 #Use this if regex is undefined

src/run.jl

@@ -315,7 +315,9 @@ function eval_chunk(chunk::CodeChunk, report::Report, SandBox::Module)
       chunk = Base.invokelatest(hook, chunk)
     end
 
-    if chunk.options[:term]
+    if chunk.options[:suppress_output]
+        chunks = CodeChunk[]
+    elseif chunk.options[:term]
         chunks = collect_results(chunk, TermResult())
     elseif chunk.options[:hold]
         chunks = collect_results(chunk, CollectResult())